CF835127

Overview
NameCF835127
Unique NameCF835127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5287 contig Csv1_Contig5287:380..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 76/254 (29.92%), Postives = 128/254 (50.39%), Query Frame = 2
Query:    5 QMALYQYYLLSVMLLLPALCYS----HYTSTYSR--ATYYGSPDSLGTPTGACGF--GEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK-----TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDY-QEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724
            Q+ L  + +++ + +LP  C S       S++S   AT+YG+ +  G+  GACG+    +    +    AG   ++K+G GCG+CYQV+C     C                        F LS  A+G MA P ++ +L + GV+ +++ RVPC + G  L F V   S  P+Y A+ + Y  G  D+  VE+ Q      W  M++++GAV+ +++          +++ S+G T +VA+N IPS WK G++
Sbjct:    6 QLILSTFVVIAAVTMLPRPCASIEFHRKLSSWSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVTVVLTDECPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVKLTFVVDVGSN-PNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKT-LVASNVIPSGWKPGMS 257          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.279e-25
Identity = 74/225 (32.89%), Postives = 116/225 (51.56%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRTVNDANVA-GVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQE----------WVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWK 712
            +RAT+YG+P+  G     GACGF         A  + G   L+K+G GCG+CYQ+RC     C                 +   F LS  A+G MA  +++ EL   G+++++FRRVPC Y G  + F V + S  P Y+AI + Y  G  DV+ V++ +  Y            W  MR ++G+++  D + P +G  SLR  ++  +G T ++A+  IP+DW+
Sbjct:   95 ARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVSLYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSN-PVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIWRLDTNHPLQGPFSLR--ITNESGKT-LIADQVIPADWQ 315          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 80/257 (31.13%), Postives = 127/257 (49.42%), Query Frame = 2
Query:    5 QMALYQYYLLSVMLLLPALCYS----HYTSTYSR--ATYYGSPDSLGTPTGACGFGEYGRTVNDAN-----VAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK-----TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDY-QEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724
            Q+ L  + +++   LLP  C S       S++S   AT+YG+ +  G+  GACG   Y   V+ A       AG   ++K+G GCG+CYQV+C     C                        F LS  A+G MA P ++ +L + GV+ +++ RVPC + G  L F V   S  P Y A+ + Y  G  D+  +++ Q      W  M++++GAV+ +S+       L  +++ S+G T +VA+N IPS WK G +
Sbjct:    6 QLILSTFVVIAAFTLLPRPCASIEFHRKLSSWSNGGATWYGAANGAGSDGGACG---YQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVTVVLTDECPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVMLTFAVDAGSN-PSYFAVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLSAGAALQAPLSIRLTSSSGKT-LVASNVIPSGWKPGAS 257          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 65/212 (30.66%), Postives = 108/212 (50.94%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGR-TVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX--KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDW 709
            +RAT+YG+P   G     GACGF    +   +     G   ++K+G GCG+CYQ+RC     C                  K  F LS  A+G MA P ++ +L   G+++++F+RVPC + G  + F V E S  P Y A+ + Y  G  DV+ V++ + + Q W  MR ++G+++ + S          +++  +G   +VA+  IP++W
Sbjct:   45 ARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPACSGNPETVIITDMNYYPVSKYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSN-PVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSNHRLTAPFSLRITNESG-KQLVASQVIPANW 254          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.848e-24
Identity = 75/218 (34.40%), Postives = 110/218 (50.46%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGEY--GRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLC-----XXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ-EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWV-VANNAIPSDWKAGV 721
            AT+YG P   G+  GACG+      R  +    AG   L+KNG GCG+CYQ++C   + C                        F +S  A+G MA       L S GV+ ++++RVPC +   N+ FKV   S  P+YLAI + Y  G  D+ AV I +      W AM++++GA + ++S     +S  F +  ++G   V VANN IPS W+AG+
Sbjct:   50 ATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRACSGRPVTVVITDSCPGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRF-AMNVAFKVDAGSN-PYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGL 265          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 72/220 (32.73%), Postives = 118/220 (53.64%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGE------YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLC---XXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQE-DYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +T+YG+P   G+  GACG+G       + + V+    AG   L+K+G GCGACYQV+C     C                      F LS  A+G MA+  + ++L + G + + +++V C Y G  + F+V + S   +  A+ + YV G  ++  +E+ Q  D  +W++M +++GAV+  D+SSP    +SLR   S  +G T VVA+N IP++W+ G
Sbjct:   52 STWYGNPTGYGSDGGACGYGNAVAQPPFSKMVS----AGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPGCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSN-ANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRV-TSLESGKT-VVASNVIPANWQPG 264          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 76/230 (33.04%), Postives = 117/230 (50.87%), Query Frame = 2
Query:   77 TSTY------SRATYYGS------PDSLGTPTGACGFGEYGRTVNDANVA-GVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWY-KGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWK 712
            T+TY      +RAT+YGS      PD  G   GACG+ +  +   D   A G   ++K+G GC ACY+++CK P  C                     F LS +A+G MA   +  +L   G + ++FRRV C Y  G  + F + + S   HYLA+ + Y AG  +++AV+I   D  E++ M+ ++GA++  D   P +G  S+R    G A L   V ++ IP++WK
Sbjct:   11 TATYGSKWLEARATFYGSNPRGAAPDDHG---GACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKCKEPVECSGEPVLVKITDKNYEHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSN-DHYLALLVKYAAGDGNIVAVDIKPRDSDEFIPMKSSWGAIWRIDPKKPLKGPFSIRLTSEGGAHL---VQDDVIPANWK 233          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 69/227 (30.40%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   77 TSTY------SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD--FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWY-KGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPE--GAISLRFQVSGSAGLTWVVANNAIPSDWKA 715
            T+TY      +++T+YG P   G     GACG+ +  +   +     G + ++K+G GCG+C++++C  P+ C                     F LS  A+G MA      +L S G + ++FRRV C Y +G  + F V + S  P+YLA+ + YV G  DV+AV+I ++   +W+ ++ ++GA++ I +P +  G  ++R+   G    T   A + IP  WKA
Sbjct:   34 TATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGG---TKTEAEDVIPEGWKA 256          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 81/255 (31.76%), Postives = 130/255 (50.98%), Query Frame = 2
Query:    8 MALYQYYLLSVMLLLPALCYSHYTSTYSR-----------ATYYGSPDSLGTPTGACGFGEYGRTVND-----ANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK---TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF-DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDW 709
            M L+   L ++ ++L  L  S   +T +R           AT+YGSP+  G+  GACG+G    T+ D     A V  V+  L+KNG GCGACY+VRC    +C                    T F LS   +GR+A+  +S  L + G++ V +RR  C Y+G N+ F V+E S    +L++ + +  G+ D+ ++ I Q   +EW+ M+  +GA +  I  P +G  S++   + SAG T + A + +P +W
Sbjct:    1 MQLFPVMLATLCIVLQLLIGSSALATTNRHVSNSHWLPAVATWYGSPNGDGSDGGACGYG----TLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGST-DFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGGPLKGPFSIKL-TTLSAGKT-LSATDVVPRNW 248          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 71/218 (32.57%), Postives = 109/218 (50.00%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGEY--GRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX-----KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRF--QVSGSAGLTWVVANNAIPSDWKAGV 721
            ATYYG+P+  G+  GACG+      R  +    AG   L+K G GCGACY+V+C     C                        F +S  + G MA P  + +L + G++ V++RRVPC Y G N+ F+V + +  P Y  + I +  G  D+ AV++  E    W  M + +GA++  +S    A+   F  +++  +G   +VANN IP+ WK GV
Sbjct:   69 ATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAACSGQPATVVITDECPGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGAN-PFYFEVLIEFEDGDGDLNAVDL-MEAGCGWTPMVQNWGALWRYNSNTGKALKAPFSLRLTSDSGKV-LVANNVIPASWKPGV 283          
The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
EXB15_ORYSJ9.796e-2629.92Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ1.279e-2532.89Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB18_ORYSJ1.671e-2531.13Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ORYSJ6.350e-2530.66Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB5_ORYSJ1.848e-2434.40Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ARATH3.151e-2432.73Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
MPAC1_CYNDA7.021e-2433.04Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
MPAP1_PHLPR9.169e-2430.40Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]
EXPB3_ARATH9.169e-2431.76Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXB11_ORYSJ9.169e-2432.57Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bp
TTTGCAAATGGCGTTATATCAATACTACCTTCTTTCCGTCATGCTGCTTT
TGCCTGCATTGTGTTACTCTCATTACACATCCACATATTCTAGAGCTACA
TACTATGGTAGCCCTGATAGTTTAGGGACACCAACTGGTGCTTGCGGGTT
TGGTGAATATGGAAGAACTGTAAATGATGCTAACGTGGCCGGTGTGTCGA
GGCTTTGGAAAAATGGAACTGGTTGTGGAGCTTGCTATCAAGTCAGGTGC
AAGGTACCACAACTTTGCACAGATTATGGGGTGTACGTGGTGGTGACTGA
CTACGGTGAAGGAGACAAAACAGACTTCATCCTCAGCCCGCGCGCATATG
GAAGAATGGCACTTCCAGATAAGTCAGCAGAGCTCTATTCTTATGGTGTG
GTCAACGTTGAATTCCGGAGAGTCCCTTGCTGGTACAAAGGCTACAACCT
TCAGTTCAAGGTCCATGAAAACAGCAGGTACCCACATTACTTGGCCATAG
CCATTCTGTACGTAGCTGGCCAAAATGATGTCCTAGCAGTTGAAATATGG
CAGGAGGATTATCAAGAATGGGTGGCAATGAGAAGGGCTTTCGGTGCAGT
ATTTGACATCTCTAGTCCACCAGAAGGAGCAATTAGTTTGAGGTTTCAAG
TGAGTGGCAGCGCGGGGCTCACATGGGTTGTGGCAAACAATGCTATTCCT
AGCGATTGGAAAGCTGGCGTTGCTT
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