CF835136

Overview
NameCF835136
Unique NameCF835136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  280 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 537
            D ++AG+ +P  +++ VN W +  + ++W  P  F PERF    S+ +  G +F  +PFG GRR CPG+ LA+ +L + +G ++ +F+
Sbjct:  382 DAKLAGYDIPAESKILVNAWWLANNPNSWKKPEEFRPERFFEEESHVEANGNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFE 469          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2U1_BOVIN (Cytochrome P450 2U1 OS=Bos taurus GN=CYP2U1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  226 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMD-MEDKFGLTV 528
            + GFT+PKG  +  N+W++ RD + W+ P+ F P+RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L   +   +  K+GLT+
Sbjct:  431 LQGFTIPKGTIILPNLWSVHRDPAIWEKPNDFYPDRFLDDQGQLIKKETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFTFVLPKDSKPILTGKYGLTL 531          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  280 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 537
            D ++ G+ +P  +++ VN W +  +   W  P  F PERFL   S  +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ +F+
Sbjct:  382 DAKLGGYDIPAESKILVNAWWLANNPDQWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFE 469          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  280 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 537
            D ++ G+ +P  +++ VN W +  +   W  P  F PERFL   S  +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ +F+
Sbjct:  382 DAKLGGYDIPAESKILVNAWFLANNPEHWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFE 469          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2U1_HUMAN (Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  226 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTV 528
            + G+T+PKG  +  N+W++ RD + W+ P  F P RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L  D+    +  +FGLT+
Sbjct:  431 LQGYTIPKGTLILPNLWSVHRDPAIWEKPEDFYPNRFLDDQGQLIKKETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFAFALPEDSKKPLLTGRFGLTL 532          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP17A_RANDY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana dybowskii GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = -3
Query:  223 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHN--MDMEDKFGLTVQ 528
            I  +T+PK A+V +N+W++  DE  W NPH F P+RFL  N +     +   +PFGAG R+C G  LA   + L L  ++  F  ++   +   D+E KFG+ +Q
Sbjct:  394 IGEYTIPKEARVVINLWSLHHDEKEWVNPHLFSPDRFLDENGNRVYSPSPSFLPFGAGIRVCLGEALAKMEVFLFLSWILQRFTLEVPEGDPLPDLEGKFGVVIQ 498          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: C79A2_ARATH (Phenylalanine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79A2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = -3
Query:  277 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSN--ADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW 537
            D  + G+ +PKG+ V ++   IGR+ S WD PH F PER L +N   D    +  +I F AGRR C G+ +   M +++L  LI  F W
Sbjct:  402 DTVVDGYFIPKGSHVLISRMGIGRNPSVWDKPHKFDPERHLSTNTCVDLNESDLNIISFSAGRRGCMGVDIGSAMTYMLLARLIQGFTW 490          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 537
            D ++ G+ +P  +++ VN W +  + + W  P  F PERF    S+ +  G +F  +PFG GRR CPG+ LA+ +L + LG L+ +F+
Sbjct:  382 DAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFE 469          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: C71AS_ARATH (Putative cytochrome P450 71A28 OS=Arabidopsis thaliana GN=CYP71A28 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = -3
Query:  196 VFVNVWAIGRDESTWDNPHT--FIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMED---KFGLTVQKAQPLHAVP 495
            VF+N WAI RD   W  P+   F PER L    +F+GQ+F  IPFG+GRR+CP +  A  ++ + L + +  F+W+++   +  +D   + G+ V    PL A P
Sbjct:  378 VFINAWAIHRDTEKW-GPYAEEFKPERHLDLPLNFQGQDFNFIPFGSGRRLCPDIDFATMLIEVGLANFVYRFNWRVETRPLGDDDGLKQTGMEVCHKFPLIAFP 481          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: C513F_DICDI (Probable cytochrome P450 513F1 OS=Dictyostelium discoideum GN=cyp513f1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = -3
Query:  217 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMED--KFGLTVQKA 537
            DVEI GF + KG Q+  N+++  R E  WD P +FIPERF+  NA+ K +N  ++ FG G R C G   A  M+ L +  LI ++ +   + N  +++  ++GL +  A
Sbjct:  387 DVEIKGFKIAKGTQIIQNIYSSSRSEQYWDKPLSFIPERFI-DNANIKEKNKNIVSFGLGLRGCIGKSFAEYMIFLTVVRLIKNYKFSNPSPNQPLKEIGEYGLVMNCA 494          
The following BLAST results are available for this feature:
BLAST of CF835136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
TCMO_ARATH5.967e-1435.23Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
CP2U1_BOVIN5.967e-1439.81Cytochrome P450 2U1 OS=Bos taurus GN=CYP2U1 PE=2 S... [more]
TCMO_ZINEL1.329e-1336.36Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_CATRO1.329e-1336.36Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
CP2U1_HUMAN1.329e-1339.42Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1... [more]
CP17A_RANDY1.329e-1337.14Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana d... [more]
C79A2_ARATH1.329e-1339.33Phenylalanine N-hydroxylase OS=Arabidopsis thalian... [more]
TCMO_PHAAU1.736e-1336.36Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
C71AS_ARATH2.961e-1337.14Putative cytochrome P450 71A28 OS=Arabidopsis thal... [more]
C513F_DICDI2.961e-1336.70Probable cytochrome P450 513F1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835136 ID=CF835136; Name=CF835136; organism=Citrus sinensis; type=EST; length=596bp
TAAATCGCATGACTTTATAGTCCACTTGAAGATTAACTCTGTTAAGTTGC
GTGTCTACATAAAACCAAATAAGAGCGCCCACACCTGAGAATGATTACAC
ACACATATAACTAACCACCAAGCGCTTTATATAGTGGCTACCACCAAGCG
CTTTATATATTGGCTACGAACTATAGTATAGAACTAGATGGCACCAGGGA
CAGCATGAAGGGGTTGAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCC
ATGTCCATGTTGTGGTTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGA
ACCCAACATTAGATGTAACATTCTGATTGCCAATGGTAAACCAGGACAAA
TTCGTCGTCCAGCTCCGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAA
TCAGCATTTGACCCTAAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTC
CCATGTGCTTTCATCTCTGCCAATAGCCCATACATTGACAAAAACTTGTG
CACCTTTTGGCACTGTGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTG
CGGGGAAGTAATAAGGGAGCTGCAGGGTGCAATCTCAAAGTTTCTT
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