CF835136

Overview
NameCF835136
Unique NameCF835136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2DH_MACFA (Cytochrome P450 2D17 OS=Macaca fascicularis GN=CYP2D17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = -3
Query:  271 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 537
            D+E+ GF +PKG  +F N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  381 DIELQGFLIPKGTTLFTNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 468          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2D6_HUMAN (Cytochrome P450 2D6 OS=Homo sapiens GN=CYP2D6 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = -3
Query:  271 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 537
            D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L   SL+  F + +
Sbjct:  381 DIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 468          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: C516B_DICDI (Probable cytochrome P450 516B1 OS=Dictyostelium discoideum GN=cyp516b1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = -3
Query:  277 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFK------------GQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW 537
            D+++ G+T+PKG QV ++V+ +  DE  W +PH F PER+L SN   +             Q+   IPFG G R+C G+ +A   L+     +  +F W
Sbjct:  363 DIKVGGYTIPKGTQVMMSVYGMASDERYWKDPHIFNPERWLSSNHSTENGGGGGGVVGNSSQSEVFIPFGVGPRMCVGMGVAKDELYYCASQMFMNFKW 461          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2R1_MOUSE (Vitamin D 25-hydroxylase OS=Mus musculus GN=Cyp2r1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  223 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM-DMEDKFGLTVQ 537
            D  + G+++PKG  V  N++++  DE  W +P  F PERFL SN  F  +   LIPF  GRR C G  LA   + L   SL+  F     +  + +++ + G+T+Q
Sbjct:  386 DAVVRGYSIPKGTTVITNLYSVHFDEKYWKDPDMFYPERFLDSNGYFTKKE-ALIPFSLGRRHCLGEQLARMEMFLFFTSLLQQFHLHFPHELVPNLKPRLGMTLQ 490          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP1A1_MOUSE (Cytochrome P450 1A1 OS=Mus musculus GN=Cyp1a1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = -3
Query:  205 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIP-FGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQPLH 537
            D  + GF +PKG  VFVN W +  D   W +P+ F PERFL  +     +  E +  FG G+R C G  +    + L L  L+   ++K+     +DM   +GLT++ A+  H
Sbjct:  397 DTSLNGFYIPKGCCVFVNQWQVNHDRELWGDPNEFRPERFLTPSGTLDKRLSEKVTLFGLGKRKCIGETIGRSEVFLFLAILLQQIEFKVSPGEKVDMTPTYGLTLKHARCEH 509          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP17A_ORYLA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzias latipes GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = -3
Query:  223 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM--DMEDKFGLTVQ 537
            D  +  FTV KG +V +N+W++  DE  W NP  F P RFL   GS+      ++  +PFGAG R+C G  LA   L L L  ++  F   +        +E KFG+ +Q
Sbjct:  387 DTSLGDFTVRKGTRVVINLWSLHHDEKEWTNPDLFNPGRFLSADGSSLTLPSSSY--LPFGAGLRVCLGEALAKMELFLFLSWILQRFTLSVPPSQSLPSLEGKFGVVLQ 494          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP17A_ICTPU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalurus punctatus GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 47/141 (33.33%), Postives = 66/141 (46.81%), Query Frame = -3
Query:  118 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMEDKFGLTVQKAQPLHAVPGAI*FYTIVRSQYIKRLVVATI*SAW 537
            D  I  +TV KG +V VN+W++  DE  W NP  F PERFL    +     +   +PFGAG R+C G  LA   L L L  ++                +F L V   QPL  + G   F  +++ Q  K  V+A + + W
Sbjct:  381 DANIGEYTVQKGTRVIVNLWSLHHDEKEWKNPELFNPERFLNEEGNSLCCPSLSYLPFGAGVRVCLGEALAKLELFLFLSWIL---------------QRFTLEVPGGQPLPELQGK--FRVVLQPQKYK--VIARLRTGW 502          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2DI_RAT (Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d18 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  271 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 537
            D+E+ GF +PKG  + +N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  384 DIEVQGFLIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: C516A_DICDI (Probable cytochrome P450 516A1 OS=Dictyostelium discoideum GN=cyp516a1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 34/106 (32.08%), Postives = 61/106 (57.55%), Query Frame = -3
Query:  223 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHN-MDMEDKFGLTVQ 537
            DV    +T+ KG+Q+ +NV+ +  D + W++P TF P R+L S  D     +  IPFG G R+C G  LA   + L +G+++ ++ ++  N   ++ +  FG+ +Q
Sbjct:  373 DVTCGPYTIEKGSQIIMNVYGLAMDPTVWEDPETFNPYRWLSS--DISQSTYSFIPFGCGSRVCVGSSLARDEIFLGIGNILLNYIFESQNGKPINEKGHFGIALQ 476          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2J3_RAT (Cytochrome P450 2J3 OS=Rattus norvegicus GN=Cyp2j3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = -3
Query:  196 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQK-AQPLHAVP 537
            D  +AGF +PKG  +  N+ A+ RD   W  P TF PE FL  N  FK +    +PF  G+R C G  LA   L + + SLI  F +K   N  + ++ +  +T+   +  L A+P
Sbjct:  387 DTYLAGFNLPKGTMILTNLTALHRDPKEWATPDTFNPEHFL-ENGQFKKRE-SFLPFSMGKRACLGEQLARSELFIFITSLIQKFTFKPPVNEKLSLQFRMSVTISPVSHRLCAIP 500          
The following BLAST results are available for this feature:
BLAST of CF835136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
CP2DH_MACFA5.585e-1240.00Cytochrome P450 2D17 OS=Macaca fascicularis GN=CYP... [more]
CP2D6_HUMAN5.585e-1240.00Cytochrome P450 2D6 OS=Homo sapiens GN=CYP2D6 PE=1... [more]
C516B_DICDI5.585e-1234.34Probable cytochrome P450 516B1 OS=Dictyostelium di... [more]
CP2R1_MOUSE9.527e-1235.85Vitamin D 25-hydroxylase OS=Mus musculus GN=Cyp2r1... [more]
CP1A1_MOUSE9.527e-1233.63Cytochrome P450 1A1 OS=Mus musculus GN=Cyp1a1 PE=1... [more]
CP17A_ORYLA9.527e-1236.36Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzia... [more]
CP17A_ICTPU9.527e-1233.33Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalu... [more]
CP2DI_RAT1.244e-1137.08Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d... [more]
C516A_DICDI1.244e-1132.08Probable cytochrome P450 516A1 OS=Dictyostelium di... [more]
CP2J3_RAT1.625e-1135.34Cytochrome P450 2J3 OS=Rattus norvegicus GN=Cyp2j3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06L18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835136 ID=CF835136; Name=CF835136; organism=Citrus sinensis; type=EST; length=596bp
TAAATCGCATGACTTTATAGTCCACTTGAAGATTAACTCTGTTAAGTTGC
GTGTCTACATAAAACCAAATAAGAGCGCCCACACCTGAGAATGATTACAC
ACACATATAACTAACCACCAAGCGCTTTATATAGTGGCTACCACCAAGCG
CTTTATATATTGGCTACGAACTATAGTATAGAACTAGATGGCACCAGGGA
CAGCATGAAGGGGTTGAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCC
ATGTCCATGTTGTGGTTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGA
ACCCAACATTAGATGTAACATTCTGATTGCCAATGGTAAACCAGGACAAA
TTCGTCGTCCAGCTCCGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAA
TCAGCATTTGACCCTAAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTC
CCATGTGCTTTCATCTCTGCCAATAGCCCATACATTGACAAAAACTTGTG
CACCTTTTGGCACTGTGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTG
CGGGGAAGTAATAAGGGAGCTGCAGGGTGCAATCTCAAAGTTTCTT
back to top