CF835140

Overview
NameCF835140
Unique NameCF835140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 68/248 (27.42%), Postives = 101/248 (40.73%), Query Frame = 1
Query:   37 RPLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHAL----DRNLXXXXXXXXXXXXWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSV-IDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEG 765
            R  LSG +  QQTC D   + KS +   + +       L S SL +VT       + NL                 T    +    L+      P     +  R +         V  + +V+  GT  F TI DA+   P  +K     F                K   ++  IGDG N+T+ITG+ +  I    TF ++T  + G+ F A ++  +NTAGP   QAVALR +AD + F+ C  +G
Sbjct:  153 RVWLSGSIAFQQTCMDSFGEIKSNLMQDMLKIFKTSRELSSNSLAMVTRISTLIPNSNLTGL--------------TGALAKYARKLLSTEDSIPTWVGPEARRLMAAQGGGPGPVKANAVVAQDGTGQFKTITDALNAVPKGNKVP---FIIHIKEGIYKEKVTVTKKMPHVTFIGDGPNKTLITGSLNFGIGKVKTFLTATITIEGDHFTAKNIGIENTAGPEGGQAVALRVSADYAVFHSCQIDG 383          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 48/147 (32.65%), Postives = 69/147 (46.94%), Query Frame = 1
Query:  331 ERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSV--IDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEG 765
            +  +GE    G  +  + +V+  G+  F TI +A+   P  +    G                 PK   N+ + GDG  +T+IT + SV    G TT  S T  V  E F+A  + F+NTAGP  HQAVA R N D +  + C F+G
Sbjct:  256 DEGIGEGGGGGGKIKPTHVVAKDGSGQFKTISEAVKACPEKNP---GRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGHQAVAFRVNGDRAVIFNCRFDG 399          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.379e-12
Identity = 47/147 (31.97%), Postives = 69/147 (46.94%), Query Frame = 1
Query:  331 ERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSV--IDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEG 765
            +  +GE    G  +  + +V+  G+  F TI +A+   P  +    G                 PK   N+ + GDG  +T+IT + SV    G TT  S T  V  E F+A  + F+NTAGP  +QAVA R N D +  + C F+G
Sbjct:  243 DEGIGEGGGGGGKIKPTHVVAKDGSGQFKTISEAVKACPEKNP---GRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGNQAVAFRVNGDRAVIFNCRFDG 386          
The following BLAST results are available for this feature:
BLAST of CF835140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
PME23_ARATH1.629e-1327.42Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME_BRANA2.128e-1332.65Probable pectinesterase/pectinesterase inhibitor O... [more]
PME_BRACM1.379e-1231.97Pectinesterase/pectinesterase inhibitor (Fragment)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835140 ID=CF835140; Name=CF835140; organism=Citrus sinensis; type=EST; length=765bp
CTGAGTCGATGACGGATGAATTCGTGGACAGAGTCACGACCTCTGCTGAG
TGGGATCGTCACGAATCAGCAGACTTGCTTTGACGAGCTTGTGGATTCGA
AGAGCGGCATTGCTGCTGTGCTGTATGAGCCGCTGTCGAATGTGACTCGT
TTGTACAGTGTTTCGCTTGGGCTCGTGACCCACGCACTGGACCGGAATTT
GAGGCGGAATAAGAAGCGAAGCAAACGGTCCAAGAATTGGTTTTTGAAGA
ACACGAACCGGTTTCGTGAACCGCTCGAGACTCTTATCAAGGATATAAGA
AAGGCACCTTGCCATGATTGCCACAAAGGAGAAAGAAATCTTGGTGAAGT
GGAGAGCAATGGAATTCTTGTAAACCAAAGTGTGATAGTGAGCCCACATG
GGACTGATAATTTCACAACAATCGGGGATGCCATTGCATTTTCTCCCAAT
AACTCCAAGCCCGAAGATGGGTATTTTGTTATCTATGCACGAGAAGCTGT
TTACGAAGAATACGTGGTTGTTCCTAAGCATAAGAAGAATCTCTTGCTCA
TTGGTGATGGCATCAATCGGACTGTCATTACTGGAAATCACAGTGTCATT
GATGGCTGGACTACTTTCAATTCTTCAACTTTCGCTGTTTCTGGTGAGAG
ATTTGTAGCGGTAGATGTTACATTTAAGAACACAGCTGGTCCTGCAAAGC
ACCAAGCAGTAGCTCTGAGGAACAATGCTGATCTCTCATCATTCTACCGT
TGCAGTTTTGAAGGC
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