CF835142

Overview
NameCF835142
Unique NameCF835142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:476..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.156e-42
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +I+HN D   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AYHK++VKRN WPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  136 VIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 9.156e-42
Identity = 75/103 (72.82%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +ISHNP+   +RVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  136 VISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.727e-40
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            II HNPD + TRV+LPSGAKKII S  R +IG +AGGGRT+KPLLKAG A+HK+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  136 IIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 3.847e-40
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            II HNPD + TRV+LPSGAKK+I S  R +IG +AGGGR +KPLLKAG A+HK+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  136 IIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.562e-40
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +I HNPD + TR++LPSGAKKI+ S  R +IG +AGGGR +KPLLKAG A+HK++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  136 VIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.577e-32
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = -2
Query:  170 TRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 448
            T+V+LPSG    +P+  RA IG +AGGGR EKPLLKAGNAYHK++VK   WPKVRGVAMN V HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  137 TQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHI 229          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.339e-29
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = -2
Query:  170 TRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 448
            T+V+LPSG    +P+  RAMIG +AGGGR EKPLLKAG AY+K+  K   WPKVRGVAMN   HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  137 TQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHI 229          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.806e-29
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = -2
Query:  170 DTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 454
            D   V++PSG +K     CRAMIG VAGGGRT+KP +KAG  YHK + K   WP+VRGVAMN V+HP GGG HQH+G   TV R+APPG+KVG I
Sbjct:  134 DKVLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.378e-28
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +ISH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  132 VISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.412e-28
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +ISH  D   T V+LPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQHIG  S+V R   PG+KVG I
Sbjct:  132 VISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232          
The following BLAST results are available for this feature:
BLAST of CF835142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL8_DROME9.156e-4274.7660S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_DANRE9.156e-4272.8260S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL2_CANGA1.727e-4072.8260S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST3.847e-4071.8460S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_ASHGO6.562e-4069.9060S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_STAMF6.577e-3267.7450S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_DESK12.339e-2964.5250S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_ARCFU6.806e-2961.0550S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]
RL2_METM53.378e-2858.2550S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METMP4.412e-2858.2550S ribosomal protein L2P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835142 ID=CF835142; Name=CF835142; organism=Citrus sinensis; type=EST; length=479bp
AAGATTNAAATTTGAANAAATTTTTCTAAGGTAATGATGCAGCAGGAAAA
GTAAAATGACAGATCGCGATAGAGAGACGATTTGTTGTAACACAAAGGAT
TTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCC
GACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCCAGGAGGAGCA
TCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCC
ATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGC
AGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGG
GGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCATCGCTCTGCA
GCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGG
TGTCATTATCGGGGTTATGACTGATGATA
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