CF835142
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 9.156e-42 Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +I+HN D TRVKLPSGAKK++PS RAM+G VAGGGR +KP+LKAG AYHK++VKRN WPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KVGLI Sbjct: 136 VIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3) HSP 1 Score: 169.088 bits (427), Expect = 9.156e-42 Identity = 75/103 (72.82%), Postives = 89/103 (86.41%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +ISHNP+ +RVKLPSG+KK+I S RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG ST+RRDAP G+KVGLI Sbjct: 136 VISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.727e-40 Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 II HNPD + TRV+LPSGAKKII S R +IG +AGGGRT+KPLLKAG A+HK+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A GQK GLI Sbjct: 136 IIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3) HSP 1 Score: 163.696 bits (413), Expect = 3.847e-40 Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 II HNPD + TRV+LPSGAKK+I S R +IG +AGGGR +KPLLKAG A+HK+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A GQK GLI Sbjct: 136 IIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 6.562e-40 Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +I HNPD + TR++LPSGAKKI+ S R +IG +AGGGR +KPLLKAG A+HK++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A GQK GLI Sbjct: 136 VIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 6.577e-32 Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = -2 Query: 170 TRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 448 T+V+LPSG +P+ RA IG +AGGGR EKPLLKAGNAYHK++VK WPKVRGVAMN V HPHGGG+HQH+G STV R+ PPG+KVG I Sbjct: 137 TQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHI 229
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.339e-29 Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = -2 Query: 170 TRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 448 T+V+LPSG +P+ RAMIG +AGGGR EKPLLKAG AY+K+ K WPKVRGVAMN HPHGGG+HQH+G STV R+ PPG+KVG I Sbjct: 137 TQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHI 229
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 6.806e-29 Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = -2 Query: 170 DTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 454 D V++PSG +K CRAMIG VAGGGRT+KP +KAG YHK + K WP+VRGVAMN V+HP GGG HQH+G TV R+APPG+KVG I Sbjct: 134 DKVLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 3.378e-28 Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +ISH D T VKLPSG K++ CRA +G VAGGGR EKP +KAG YH K WPKVRGVAMN V+HP+GGG HQH+G S+V R PG+KVG I Sbjct: 132 VISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 4.412e-28 Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +ISH D T V+LPSG K++ CRA +G VAGGGR EKP +KAG YH K WPKVRGVAMN V+HP+GGG HQHIG S+V R PG+KVG I Sbjct: 132 VISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232 The following BLAST results are available for this feature:
BLAST of CF835142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835142 ID=CF835142; Name=CF835142; organism=Citrus sinensis; type=EST; length=479bpback to top |