CF835143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22 Identity = 66/207 (31.88%), Postives = 100/207 (48.31%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 KG S + HR G + +R +DF Y+ G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HP Sbjct: 39 KGRNSRGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIISGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 229
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SYNAS (50S ribosomal protein L2 OS=Syntrophus aciditrophicus (strain SB) GN=rplB PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22 Identity = 64/183 (34.97%), Postives = 100/183 (54.64%), Query Frame = 1 Query: 85 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 ++R +DF + G +A I +DP R A +A V++ +K IA + G+ + G++A + GN +P+R+IP G+++ N+E VG G L R++G Y +++ + +V+LPSG + I CRA IGQV + KAG ++ KR PKVRGV MNPV+HP Sbjct: 61 RYRFIDFKREKLDVPGKIASIEYDPNRSARIALVSYEDG-----EKRYIIAPAKVAVGEKIVSGERADIKAGNAMPLRNIPVGSLIHNIELKVGKGGQLIRSAGTYGQLMA--KEGSYAQVRLPSGEMRKIFIDCRATIGQVGNNEHENISVGKAGRT--RWAGKR---PKVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22 Identity = 67/202 (33.17%), Postives = 97/202 (48.02%), Query Frame = 1 Query: 28 RKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 R G + + H R +R +DF + V I +DP R A + + + +K +A EG+ GQ V G ++VGN LP+ +IPEG V NVE G G++AR++G A I+ + D ++L SG + I + CRA IG V G + L KAG + H P VRG MNP++HP Sbjct: 44 RNNQGKITVRHQGGRV-KRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYADG-----EKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHP 234
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21 Identity = 72/197 (36.55%), Postives = 104/197 (52.79%), Query Frame = 1 Query: 61 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 T HR G ++R +DF +RN +G+V +I +DP R LA ++++ K +A +GM G V G A ++ GN L ++ IP G+ V NVE G+ +ARA+G YA I+ D ++L SG ++I S C+A IG V+ + L KAG R+ W P VRGVAMNPV+HP Sbjct: 51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAG---------RSRWLGIRPTVRGVAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_WOLTR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplB PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21 Identity = 73/208 (35.10%), Postives = 109/208 (52.40%), Query Frame = 1 Query: 28 RKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 R G + + H H+K ++R +DF +RN +GVV +I +DP R LA V+++ K +A +G+ G V G ++ GN LP++ IP G+ V VE G V+ARA+G YA ++ D + ++L SG +++ S C+A IG V+ R + L KAG R+ W P VRGVAMNPV+HP Sbjct: 43 RNNNGRITIRHKGGGHKK---KYRIIDF-KRNRNDQGVVEKIEYDPNRSGFLALVSYKCD----DTKSYILAPQGIKPGDIVMSGSGIDILPGNCLPLKGIPIGSFVHGVELKPGSGAVIARAAGCYAQVVGR--DGNYVLLRLRSGQVRLVLSSCKATIGVVSNPDRKNRKLGKAG---------RSRWLGVRPTVRGVAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21 Identity = 69/195 (35.38%), Postives = 100/195 (51.28%), Query Frame = 1 Query: 67 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 HR G ++R +DF + G VA I +DP R A +A + + +K IA G+ G V G+ + VGN LP+R+IP G +V N+E G G L RA+G A +++ + D +++PSG ++I + CRA IGQV+ + KAG R+ W P VRG AMNPV+HP Sbjct: 53 HRGGGHKRRYRIIDFKRDKDGIPGKVAAIEYDPNRTAFIALIHYADG-----EKRYIIAPHGLKVGDIVESGENVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMA--KEGDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21 Identity = 65/207 (31.40%), Postives = 100/207 (48.31%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 KG + + HR G + +R +DF Y+ G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HP Sbjct: 39 KGRNARGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIISGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 229
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_WOLPP (50S ribosomal protein L2 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21 Identity = 72/197 (36.55%), Postives = 104/197 (52.79%), Query Frame = 1 Query: 61 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 T HR G ++R +DF +RN +G+V +I +DP R LA ++++ K +A +GM G V G A ++ GN L ++ IP G+ V NVE G+ +ARA+G YA I+ D ++L SG ++I S C+A IG V+ + L KAG R+ W P VRGVAMNPV+HP Sbjct: 51 TRHRGGGHKKKYRVIDF-KRNRSDQGIVEKIEYDPNRSGFLALISYKED----DTKSYILAPQGMKPGDVVTAGDDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNLDHKNRKLGKAG---------RSRWLGIRPAVRGVAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_WOLPM (50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21 Identity = 71/197 (36.04%), Postives = 104/197 (52.79%), Query Frame = 1 Query: 61 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 T HR G ++R +DF +RN +G+V +I +DP R LA ++++ K +A +GM G V G A ++ GN L ++ IP G+ V NVE G+ +ARA+G YA I+ D ++L SG ++I S C+A IG V+ + L KAG R+ W P VRG+AMNPV+HP Sbjct: 51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAG---------RSRWLGIRPTVRGIAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21 Identity = 68/195 (34.87%), Postives = 101/195 (51.79%), Query Frame = 1 Query: 67 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 HR G ++R +DF + G VA I +DP R A +A + + +K IA G+ G + G+ + VGN LP+R+IP G ++ N+E G G L RA+G A +++ + D +V++PSG ++I + CRA IGQV+ + KAG R+ W P VRG AMNPV+HP Sbjct: 53 HRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHP 231 The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bpback to top |