CF835143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_TROW8 (50S ribosomal protein L2 OS=Tropheryma whipplei (strain TW08/27) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 68/189 (35.98%), Postives = 95/189 (50.26%), Query Frame = 1 Query: 85 QFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 ++R +DF +++G +K VA I +DP R A +A + F K +A G+ G V G A + GN L +R IP G ++ VE G LAR++G + + D D +KLPSG +++ CRA IG+V G R L KAG R+ W P VRGVAMNPV+HP Sbjct: 61 RYRLVDFRRSDKDG-VKAKVAHIEYDPNRTARIALLHFLDG-----AKRYILAPSGLKQGDVVESGSSADIRPGNSLCIRDIPVGTILHAVELRPGQGAKLARSAGSSVRLSAK--DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHP 232
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 64/205 (31.22%), Postives = 100/205 (48.78%), Query Frame = 1 Query: 25 QRKGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 ++KG + + HR G + +R +DF + G V + +DP R A + V + +K +A + G + G +A +GN +P+ IP G VV NVE + G G + RA+G A +++ + +KLPSG ++I C A IGQ+ L KAG + ++ +R PKVRG MNPV+HP Sbjct: 45 RKKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDG-----EKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDHP 237
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 61/186 (32.80%), Postives = 92/186 (49.46%), Query Frame = 1 Query: 88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 +R +DF + +V I +DP R A +A + + + +A + + G + K A + +GN LP+R IP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C A IG V+ + L KAG RN W P VRGVAMNPV+HP Sbjct: 62 YRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG-----EHAYILAPQKLVVGDKIISSKDADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 61/186 (32.80%), Postives = 92/186 (49.46%), Query Frame = 1 Query: 88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 +R +DF + +V I +DP R A +A + + + +A + + G + K A + +GN LP+R IP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C A IG V+ + L KAG RN W P VRGVAMNPV+HP Sbjct: 62 YRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG-----EHAYILAPQKLVVGDKIISSKDADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 1 Query: 88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 +R++DF R + V + +DP R A +A V + + +A + + G V G + + GN +P+ +IP G +V NVE G G +AR++G Y ++ D ++L SG ++++P+ C A IG V+ + + KAG RN W P VRGV MNPV+HP Sbjct: 62 YRTVDFKRRRYDVPATVERLEYDPNRTAFIALVKYEDG-----ELAYILAPQRLQPGDVVISGSRVDVKPGNAMPLANIPVGTIVHNVEMKPGKGGQIARSAGTYVQLVGR--DQGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAG---------RNRWLGKRPHVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NOSP7 (50S ribosomal protein L2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 68/198 (34.34%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 61 THHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 T R+G +R +DF + VA I +DP R A +A + ++ +K + G+ G + G ++ GN LP+ IP G V NVE G G + RA+G A +++ + D +KLPSG ++I C A IGQV G T+ L AG A RN W PKVRG MNPV+HP Sbjct: 50 TSRRRGGGHKQLYRIIDFKRDKHNIPAKVAAIEYDPNRNARIALLYYQDG-----EKRYILHPNGLKVGTIIISGPESPFEDGNALPLSRIPLGTSVHNVEMTPGKGGQIVRAAGASAQVVA--KEGDYVTLKLPSGEVRLIRRDCYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NEIMB (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup B GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1 Query: 16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633 I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HP Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NEIG2 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1 Query: 16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633 I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HP Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGISAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NEIG1 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1 Query: 16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633 I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HP Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGISAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MYCMO (50S ribosomal protein L2 OS=Mycoplasma mobile GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 59/208 (28.37%), Postives = 101/208 (48.56%), Query Frame = 1 Query: 19 RAQRKGAGSVFLSHTHHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 +A R +G + H KG + +R +DF + ++ +V I +DP R A ++ + ++ F K + +G+ + G+ + +GN LP+++IPEG + N+E ++AR++G A I+ + + ++L SG + I + CRA IG V + + KAG HK P VRG AMNP +HP Sbjct: 41 KAGRNNSGQITTRH----KGSGEKRKYRLVDFKRQKDNIEAIVKTIEYDPNRSANISLIVYKDGF-----KSYILYPKGLKVNDVIVSGEDVDIKIGNTLPLKNIPEGTFIHNIEMQPKGGAIIARSAGSSAQILGKDDNGKYVVLRLKSGETRRILAECRATIGVVGNEEHSLVNVGKAGRNRHK-----GIRPTVRGSAMNPNDHP 234 The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bpback to top |