CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_TROW8 (50S ribosomal protein L2 OS=Tropheryma whipplei (strain TW08/27) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 68/189 (35.98%), Postives = 95/189 (50.26%), Query Frame = 1
Query:   85 QFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            ++R +DF   +++G +K  VA I +DP R A +A + F         K   +A  G+  G  V  G  A +  GN L +R IP G ++  VE   G    LAR++G    + +   D D   +KLPSG  +++   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HP
Sbjct:   61 RYRLVDFRRSDKDG-VKAKVAHIEYDPNRTARIALLHFLDG-----AKRYILAPSGLKQGDVVESGSSADIRPGNSLCIRDIPVGTILHAVELRPGQGAKLARSAGSSVRLSAK--DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 64/205 (31.22%), Postives = 100/205 (48.78%), Query Frame = 1
Query:   25 QRKGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            ++KG  +  +    HR G  +  +R +DF      + G V  + +DP R A +  V +        +K   +A   +  G  +  G +A   +GN +P+  IP G VV NVE + G  G + RA+G  A +++   +     +KLPSG  ++I   C A IGQ+         L KAG +  ++  +R   PKVRG  MNPV+HP
Sbjct:   45 RKKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDG-----EKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDHP 237          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 61/186 (32.80%), Postives = 92/186 (49.46%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  +   K A + +GN LP+R IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C A IG V+   +    L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   62 YRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG-----EHAYILAPQKLVVGDKIISSKDADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 61/186 (32.80%), Postives = 92/186 (49.46%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  +   K A + +GN LP+R IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C A IG V+   +    L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   62 YRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG-----EHAYILAPQKLVVGDKIISSKDADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +R++DF  R   +   V  + +DP R A +A V +        +    +A + +  G  V  G +  +  GN +P+ +IP G +V NVE   G  G +AR++G Y  ++    D     ++L SG ++++P+ C A IG V+    +   + KAG         RN W    P VRGV MNPV+HP
Sbjct:   62 YRTVDFKRRRYDVPATVERLEYDPNRTAFIALVKYEDG-----ELAYILAPQRLQPGDVVISGSRVDVKPGNAMPLANIPVGTIVHNVEMKPGKGGQIARSAGTYVQLVGR--DQGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAG---------RNRWLGKRPHVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NOSP7 (50S ribosomal protein L2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 68/198 (34.34%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   61 THHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            T  R+G      +R +DF      +   VA I +DP R A +A + ++       +K   +   G+  G  +  G ++    GN LP+  IP G  V NVE   G  G + RA+G  A +++   + D   +KLPSG  ++I   C A IGQV   G T+   L AG A       RN W    PKVRG  MNPV+HP
Sbjct:   50 TSRRRGGGHKQLYRIIDFKRDKHNIPAKVAAIEYDPNRNARIALLYYQDG-----EKRYILHPNGLKVGTIIISGPESPFEDGNALPLSRIPLGTSVHNVEMTPGKGGQIVRAAGASAQVVA--KEGDYVTLKLPSGEVRLIRRDCYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NEIMB (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup B GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1
Query:   16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HP
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NEIG2 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1
Query:   16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HP
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGISAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NEIG1 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1
Query:   16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HP
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGISAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MYCMO (50S ribosomal protein L2 OS=Mycoplasma mobile GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 59/208 (28.37%), Postives = 101/208 (48.56%), Query Frame = 1
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +A R  +G +   H    KG  +   +R +DF  +   ++ +V  I +DP R A ++ + ++  F     K   +  +G+     +  G+   + +GN LP+++IPEG  + N+E       ++AR++G  A I+  + +     ++L SG  + I + CRA IG V     +   + KAG   HK        P VRG AMNP +HP
Sbjct:   41 KAGRNNSGQITTRH----KGSGEKRKYRLVDFKRQKDNIEAIVKTIEYDPNRSANISLIVYKDGF-----KSYILYPKGLKVNDVIVSGEDVDIKIGNTLPLKNIPEGTFIHNIEMQPKGGAIIARSAGSSAQILGKDDNGKYVVLRLKSGETRRILAECRATIGVVGNEEHSLVNVGKAGRNRHK-----GIRPTVRGSAMNPNDHP 234          
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_TROW81.191e-1835.9850S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]
RL2_SYNJB1.191e-1831.2250S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]
RL2_RICBR1.191e-1832.8050S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_RICB81.191e-1832.8050S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_PARL11.191e-1831.1850S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_NOSP71.191e-1834.3450S ribosomal protein L2 OS=Nostoc punctiforme (st... [more]
RL2_NEIMB1.191e-1832.3750S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIG21.191e-1832.3750S ribosomal protein L2 OS=Neisseria gonorrhoeae ... [more]
RL2_NEIG11.191e-1832.3750S ribosomal protein L2 OS=Neisseria gonorrhoeae ... [more]
RL2_MYCMO1.191e-1828.3750S ribosomal protein L2 OS=Mycoplasma mobile GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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