CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MOOTA (50S ribosomal protein L2 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/191 (34.03%), Postives = 96/191 (50.26%), Query Frame = 1
Query:   67 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            HR G  +  +R +DF      + G VA I +DP R A +A + +        +K   +A E +  G  V  G +A + VGN LP+  IP G +V NVE   G  G +AR++G  A +++   +     ++LPSG  + +   CRA +GQV   G  +   +  G A  K  +     P VRGV MNPV+HP
Sbjct:   53 HRGGGHKRLYRVIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYILAPENLQVGDQVISGPEADIKVGNALPLSQIPVGTMVHNVELKPGKGGQMARSAGAGAQLMA--KEGGYALLRLPSGEVRKVQESCRATVGQV---GNLDWENINIGKAGRKRWL--GIRPTVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MICAN (50S ribosomal protein L2 OS=Microcystis aeruginosa (strain NIES-843) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/193 (33.68%), Postives = 93/193 (48.19%), Query Frame = 1
Query:   61 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            + HR G  +  +R +DF      +   VA I +DP R A +A + ++       +K   IA  G+  G  V  G+ A   VGN LP+  IP G  V N+E   G  G + RA+G +A +++   + D   ++LPS   ++I   C A IG+V         L KAG   H     R   P VRG  MNPV+HP
Sbjct:   51 SRHRGGGHKRLYRIIDFRRDKRDIPAKVAAIEYDPNRNARIALLFYKDG-----EKRYIIAPAGLGVGDTVIAGENAPFEVGNALPLSRIPLGTEVHNIELVPGRGGQMVRAAGGFAQVVA--KEGDYVTIRLPSKEVRMIRRECYATIGKVGNAEARNISLGKAGRTRH-----RGQRPHVRGSVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_METEP (50S ribosomal protein L2 OS=Methylobacterium extorquens (strain PA1) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 63/186 (33.87%), Postives = 94/186 (50.54%), Query Frame = 1
Query:   91 RSLDFGER-NGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            R++DF  R N  +   V  I +DP R A +A +TF        ++   +A + +  G  V  G+   +  GN  P+ S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   63 RNVDFKRRENLNVPATVERIEYDPNRTAFIALITFPDG-----KQSYILAPQRLSPGDKVIAGESVDVKPGNAAPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNISLGKAG---------RNRWLGKRPHVRGVAMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_METC4 (50S ribosomal protein L2 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 63/186 (33.87%), Postives = 94/186 (50.54%), Query Frame = 1
Query:   91 RSLDFGER-NGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            R++DF  R N  +   V  I +DP R A +A +TF        ++   +A + +  G  V  G+   +  GN  P+ S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   63 RNVDFKRRENLNVPATVERIEYDPNRTAFIALITFPDG-----KQSYILAPQRLSPGDKVIAGESVDVKPGNAAPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFATVGAVSNPDHMNISLGKAG---------RNRWLGKRPHVRGVAMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MESFL (50S ribosomal protein L2 OS=Mesoplasma florum GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/208 (31.25%), Postives = 100/208 (48.08%), Query Frame = 1
Query:   28 RKGAGSVFLSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            + G  +  L  T H+ G    ++R +DF      + G +A I +DP R A +  V +        +K   + A+GM  G  +   + A + VGN  P+++IPEG ++ NVE   G  G +AR++G    I+  + D     ++L SG  + + + C A IG+V   G  E  L+  G A       RN W    P VRG  MNP +HP
Sbjct:   41 KAGRNNRGLITTRHKGGGHKQKYRIIDFKRNKRDVVGTIATIEYDPNRNAFICLVNYLDG-----EKRYILFAKGMTVGMKIVASEHADIKVGNAAPLKNIPEGTLIHNVELKPGKGGQMARSAGTSVQILGKDDDGKYVTLRLTSGEVRKVLADCYATIGEV---GNEEYNLVNWGKA------GRNRWRGIRPTVRGSVMNPNDHP 234          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MACCJ (50S ribosomal protein L2 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 73/217 (33.64%), Postives = 107/217 (49.31%), Query Frame = 1
Query:    4 MGPLIR-AQRKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            + PL R A R   G + + H    H++   Q+R +DF      +   VA I +DP R A +A + +        +K   IA +G+  G  V  G +A + VGN LP+++IP G V+ N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   34 LAPLPRKAGRNNQGKLTVRHRGGGHKR---QYRIIDFKRNKDGIPAKVATIEYDPNRSANIALLHYLDG-----EKRYIIAPKGLTVGTQVVNGPEADIKVGNCLPLQNIPVGTVIHNIELKPGKGGQLVRSAGASAQVL--GKEGKYVLVRLKSGEVRMILSTCRATIGQV---GNEQHELINIGKA------GRSRWKGIRPTVRGSVMNPNDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BURP8 (50S ribosomal protein L2 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/207 (31.40%), Postives = 102/207 (49.28%), Query Frame = 1
Query:   16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            I  + KG G     H HH      +R +DF      +   V  + +DP R A +A V +        ++   IA +G+  GQ +  G +A +  GN LP+R+IP G  +  +E   G    +AR++G  A++++   +    +V+L SG  + +   CRA IG+V     + + + KAG N +   R      P VRGVAMNPV+HP
Sbjct:   49 ITTRHKGGG-----HKHH------YRIVDFRRTKDGIPAKVERLEYDPNRSANIALVVYADG-----ERRYIIAPKGVTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGTYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIR------PTVRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BUCAT (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HP
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BUCAI (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HP
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BUCA5 (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +R +DF      +   V    +DP R + +A + ++       +++  +A +G+  G  +  G +A +  GN LP+++IP G  V NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HP
Sbjct:   62 YRIVDFKRNKDDIGATVERFEYDPNRSSNIALILYKDG-----ERKYILAPKGIKIGDTIISGLRAPIKTGNTLPLKNIPVGTFVHNVELKPGKGGQIARSAGSYVQLVAF--DEEYATLRLRSGEMRKTQSNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHP 231          
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_MOOTA1.191e-1834.0350S ribosomal protein L2 OS=Moorella thermoacetica... [more]
RL2_MICAN1.191e-1833.6850S ribosomal protein L2 OS=Microcystis aeruginosa... [more]
RL2_METEP1.191e-1833.8750S ribosomal protein L2 OS=Methylobacterium extor... [more]
RL2_METC41.191e-1833.8750S ribosomal protein L2 OS=Methylobacterium chlor... [more]
RL2_MESFL1.191e-1831.2550S ribosomal protein L2 OS=Mesoplasma florum GN=r... [more]
RL2_MACCJ1.191e-1833.6450S ribosomal protein L2 OS=Macrococcus caseolytic... [more]
RL2_BURP81.191e-1831.4050S ribosomal protein L2 OS=Burkholderia phymatum ... [more]
RL2_BUCAT1.191e-1831.8750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCAI1.191e-1831.8750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BUCA51.191e-1831.8750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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