CF835143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 65/208 (31.25%), Postives = 99/208 (47.60%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS-IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 KG + + HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ + +P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HP Sbjct: 39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 230
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS--IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 KG + + HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ + +P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+HP Sbjct: 39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSATDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_VARPS (50S ribosomal protein L2 OS=Variovorax paradoxus (strain S110) GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 68/212 (32.08%), Postives = 103/212 (48.58%), Query Frame = 1 Query: 10 PLIRAQRKGAGSVFLSHT--HHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 PL+ Q + AG H HR G A+ +R +DF + V I +DP R A +A V + ++ IA G+ G + G +A + GN LP+R+IP G+ + +E G +AR++G A +++ + +V++ SG + I CRA IG+VA + + L KAG H P VRGV MNPV+HP Sbjct: 32 PLLEPQFQKAGRNNNGHITIRHRGGGAKHHYRVVDFVRNKDGIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRGLEAGATLLSGSEAPIRAGNTLPIRNIPVGSTIHCIELQPGKGAQIARSAGTSATLLAR--EGVYAQVRMRSGEVRRIHIECRATIGEVANEEHSLRQLGKAGVKRH-----MGIRPTVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_TRIEI (50S ribosomal protein L2 OS=Trichodesmium erythraeum (strain IMS101) GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 65/207 (31.40%), Postives = 104/207 (50.24%), Query Frame = 1 Query: 19 RAQRKGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 R ++KG + + HR G + +R +DF + VA I +DP R A +A + ++ +K + G+ GQ + G A L +GN LP+ IP G V NVE G G + R++G A +++ ++ +KLPSG ++ + + C A +GQ+ L KAG ++++ KR P VRG MNPV+HP Sbjct: 37 RHRKKGRNNRGVVTCRHRGGGTKKLYRVVDFHRNKHNIPAKVAAIEYDPYRNARIALLHYQDG-----EKRYILHPLGLKVGQLITSGVNAPLEIGNALPLSKIPLGTDVHNVELVPGKGGQMVRSAGAVAQVVA--KEDQYVTIKLPSGERRKVRASCYATLGQIGNIEHRNISLGKAGR--NRWKGKR---PTVRGSVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SHEPA (50S ribosomal protein L2 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 61/182 (33.52%), Postives = 91/182 (50.00%), Query Frame = 1 Query: 88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 +R +DF + V + +DP R A +A V + ++ +AA+GM G + G A + GN LP+R+IP G+VV VE +AR++G Y +I+ D ++L SG + +P CRA +G+V + L KAG + R P VRGVAMNPV+HP Sbjct: 62 YRLIDFKRNKDGIPAKVERLEYDPNRTANIALVLYADG-----ERRYILAAKGMKAGDKIQSGIDAEIKSGNALPLRNIPVGSVVHAVEMKPAKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 63/195 (32.31%), Postives = 99/195 (50.77%), Query Frame = 1 Query: 67 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 HR G + +R +DF + + VV I +DP R A +A + + + +A + + G V + A + +GN LP++SIP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C+A IG ++ + L KAG RN W P VRGVAMNP++HP Sbjct: 53 HRGGGHKKLYRVIDFKRKKIDIFAVVERIEYDPNRTAFIALIKYDDG-----EYSYILAPQKLSIGDRVISSQAADIKIGNCLPLKSIPIGTTLHNVEMKVGKGGQIARSAGTSVELV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPIDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RHOCS (50S ribosomal protein L2 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 71/212 (33.49%), Postives = 102/212 (48.11%), Query Frame = 1 Query: 16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGER-NGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAA-EGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 I A+R G G H R+ +R +DF R + V + +DP R A +A + RY +I A + + G V G+K + GN +P+R+IP G +V NVE G G LARA+G Y ++ D ++KLPSG +++ C A IG V+ + + KAG RN W P VRGV MNP++HP Sbjct: 49 ITARRMGGG-------HKRR----YRLVDFKRRMKPDMPATVERLEYDPNRTAFIALI------RYTDGTLAYILAPQRLKAGDTVVSGEKVDVKPGNAMPLRNIPVGTIVHNVELKPGKGGQLARAAGTYLQLVGR--DQGYAQLKLPSGELRVVRGECFATIGAVSNPDQANVVIGKAG---------RNRWLGRRPSVRGVVMNPIDHP 232
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = 1 Query: 67 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 HR G + +R +DF + VA I +DP R A +A + + +K IA G+ GQ V G A + GN LP+++IP G ++ N+E + G L R++G A +++ + +++PSG +++ CRA IGQV G E + G A K + P VRGV MNPV+HP Sbjct: 53 HRGGGHKRLYRIIDFKRDKDGIPAKVASIEYDPNRSARIALLHYADG-----EKRYIIAPAGLEVGQTVVSGPDADIKAGNCLPLKNIPVGTMIHNIELYPNGGGKLVRSAGASAQLMA--KEGKYANIRMPSGEMRLLLQECRATIGQV---GNVEHENITIGKAGRKRWL--GIRPTVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NEIM0 (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1 Query: 16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633 I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HP Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEAAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MYCA5 (50S ribosomal protein L2 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 62/193 (32.12%), Postives = 96/193 (49.74%), Query Frame = 1 Query: 61 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 T H G + +R +DF + V I +DP R A ++ V + +K I+ +G+ GQ + G++ + +GN LP+++IPEG V N+E GV+AR++G A I+ + ++L SG + I + CRA +G+V G E L+ G A R P VRG AMNP +HP Sbjct: 52 TRHHGGRLKRFYRLVDFKRNKDDILATVKTIEYDPNRSANISLVVYADG-----EKRYIISPKGLKVGQKIISGEQVDIQIGNSLPLKNIPEGTYVHNIEMQPKQGGVIARSAGSSAQILGKDETGRYIILRLKSGEVRKILALCRATVGEV---GNEEHSLVNIGKAGR--NRLRGIRPTVRGSAMNPNDHP 234 The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bpback to top |