CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_LACLA (50S ribosomal protein L2 OS=Lactococcus lactis subsp. lactis GN=rplB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 66/204 (32.35%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   22 AQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            A R   G + + H H      ++R +DF      +   VA I +DP R A +A + + +       K   +A +G+  G  V  G +A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HP
Sbjct:   41 AGRNNTGRITVRH-HGGGHKRKYRVIDFKRTTDNVVAKVATIEYDPNRTANIALIVYSNGV-----KSYILAPKGLEVGMTVVSGPEADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRH-----MGIRPTVRGSVMNPNDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 70/209 (33.49%), Postives = 101/209 (48.33%), Query Frame = 1
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            R  R   G + + H   R     +R +DF      +   V  + +DP R A +A +++        +K   IA  G+  G  V  G  A ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG         R+ W    P VRGVAMNP++HP
Sbjct:   40 RGGRNSRGVITVRH-RGRGHKRLYRVVDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGDGADILPGNCLLLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGMYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RSRWLGIRPTVRGVAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_DESHY (50S ribosomal protein L2 OS=Desulfitobacterium hafniense (strain Y51) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 69/212 (32.55%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   19 RAQRKGAGSVFLSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H    H RK    +R +DF      +   VA I +DP R A +A + +         K   +A  G+  GQ V  G  A + VGN LP+++IP G ++ N+E   G    L R++G  A +++      T R  LPSG  +++   CRA IGQV   G  E   +  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRHQGGGHKRK----YRLIDFKRNKDSVPAKVASIEYDPNRSANIALLHYLDG-----HKAYILAPNGLQVGQMVVSGPDADIKVGNALPIKNIPVGTLLHNIEMKPGKGAQLVRSAGGSAQLMAKEGKYATLR--LPSGEMRMVHIDCRATIGQV---GNLEHENINIGKA------GRSRWLGIRPTVRGAVMNPNDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_DESHD (50S ribosomal protein L2 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 69/212 (32.55%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   19 RAQRKGAGSVFLSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H    H RK    +R +DF      +   VA I +DP R A +A + +         K   +A  G+  GQ V  G  A + VGN LP+++IP G ++ N+E   G    L R++G  A +++      T R  LPSG  +++   CRA IGQV   G  E   +  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRHQGGGHKRK----YRLIDFKRNKDSVPAKVASIEYDPNRSANIALLHYLDG-----HKAYILAPNGLQVGQMVVSGPDADIKVGNALPIKNIPVGTLLHNIEMKPGKGAQLVRSAGGSAQLMAKEGKYATLR--LPSGEMRMVHIDCRATIGQV---GNLEHENINIGKA------GRSRWLGIRPTVRGAVMNPNDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIAC (50S ribosomal protein L2 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 67/208 (32.21%), Postives = 101/208 (48.56%), Query Frame = 1
Query:   16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHP 633
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA   +  G  +  G +A + VGN LP+R+IP G+ +  +E   G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGVAMNP++HP
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDAIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRRIHIECRATIGEVANEEHSLRQLGKAG-------VKRWMGIRPTVRGVAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 62/191 (32.46%), Postives = 96/191 (50.26%), Query Frame = 1
Query:   67 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            HR G  +  +R +DF      + G +  I +DP R A +  +       Y   ++ +I       G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L + G    ++R KR   P VRGV MNPV+HP
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAHICLI------HYGDGEKRYILHPKAIIGDTIVYGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRVG--AKRWRGKR---PVVRGVVMNPVDHP 228          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_CYAPA (50S ribosomal protein L2, cyanelle OS=Cyanophora paradoxa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 64/212 (30.19%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   16 IRAQRKGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            ++ ++KG  +  +  T H+ G ++  +R +DF      +   VA I +DP R A +A + +++      +K   + A G+  G  VY G  A + VGN LP+  IP    + N+E   G  G L R++G  A +++   + +   ++LPSG  + +   C A IGQ+     +   + KAG         RN W    P VRGV  NPV+HP
Sbjct:   36 LKHRKKGRNNRGIITTAHKGGGSKRLYRIIDFKRDLKLVPAKVAAIEYDPNRNARIALLHYQNG-----EKGYILHARGLAVGNMVYSGPNAPIEVGNSLPLSEIPLATEIHNIELTPGKGGQLVRSAGSSAQLLA--KEGNYVTLRLPSGEMRFVRKECYATIGQIGNAEISNISIGKAG---------RNRWLGIRPTVRGVVKNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 66/213 (30.99%), Postives = 110/213 (51.64%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSVFLSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFR-HPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +G +  A R   G + +   +HR G    ++R +DF   N  + G+V  + +DP R   +A +    + F Y+      +A   +  G  V  G    + +GN LP+R+IP G ++ N+E + G  G + R++G  A +IS + +N    +KLPSG  ++ P+   A IG ++        + KAG +  ++  +R   P VRGVAMNPV+HP
Sbjct:   35 VGMIESAGRNNTGRITV---YHRGGGHKTKYRYIDFKRSNYNIPGIVERLEYDPNRTCFIALIKDNENNFSYI------LAPHDLKVGDTVITGNDIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKD-ENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRS--RWMGRR---PIVRGVAMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SHEFN (50S ribosomal protein L2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 64/204 (31.37%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   28 RKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            R   G + + H    H++    +R +DF      +   V  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN  P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HP
Sbjct:   43 RNNTGRITVRHVGGGHKQ---HYRIVDFKRNKDGIPAKVERLEYDPNRTAHIALVLYADG-----ERRYILAAKGMKAGDPIQSGLDAEIKTGNARPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 62/195 (31.79%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   67 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            HR G  +  +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGNRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231          
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LACLA1.555e-1832.3550S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_EHRCR1.555e-1833.4950S ribosomal protein L2 OS=Ehrlichia chaffeensis ... [more]
RL2_DESHY1.555e-1832.5550S ribosomal protein L2 OS=Desulfitobacterium haf... [more]
RL2_DESHD1.555e-1832.5550S ribosomal protein L2 OS=Desulfitobacterium haf... [more]
RL2_ACIAC1.555e-1832.2150S ribosomal protein L2 OS=Acidovorax avenae subs... [more]
RK2_PEA1.555e-1832.4650S ribosomal protein L2, chloroplastic OS=Pisum s... [more]
RK2_CYAPA1.555e-1830.1950S ribosomal protein L2, cyanelle OS=Cyanophora p... [more]
RM02_RECAM2.031e-1830.9960S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RL2_SHEFN2.031e-1831.3750S ribosomal protein L2 OS=Shewanella frigidimari... [more]
RL2_RICM52.031e-1831.7950S ribosomal protein L2 OS=Rickettsia massiliae (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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