CF835143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24 Identity = 74/210 (35.24%), Postives = 103/210 (49.05%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 MG I QR+G GS+ HR + + +D G V+ +IIH PGR APL + +K IA G + GQ + G ++ G + +IP+G+ V N+E GD G R++G +A+++SH +KLPSG + CRA +G VA G + P+LKAG H R K VRGVAMN V HP Sbjct: 1 MGKHIIPQRRGHGSLVYRSPSHRH-ITEVKHVDQGTY------VIKDIIHAPGRNAPLLELMGSDG-----KKAYQIAFTGAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHP 195
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24 Identity = 76/211 (36.02%), Postives = 106/211 (50.24%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGS-VFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 MG I AQR+G GS V+ S +H G ++ R+G K + +II PGR P+ + +K IA G Y Q ++ G + +G+V + +IP+G+ V N+E GD G RA+G A++ISH +KLPSG K CRA +G +AG G + P+LKAG + K VRGVAMN V HP Sbjct: 1 MGKHIVAQRRGHGSLVYRSPSHRHLGDIKY------PRDGTYK--IEDIIQAPGRNTPVLLIR-----NEKNEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHP 195
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24 Identity = 74/213 (34.74%), Postives = 113/213 (53.05%), Query Frame = 1 Query: 7 GPLIRAQRKGAGSVFLSHT---HHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 G + RA R +G + + H R+ +R +DF R+ + + VA I +DP R +A + +R K IA +G+ G + G A + +GN LP+ +IP G +V N+E ++G G L R +G YA+II+ D D VKLPSG ++I C A +G+V + KAG + ++ +R PKVRGVAMNP++HP Sbjct: 37 GKVSRAGRDSSGRISVRRRGGGHKRR----YREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHP 233
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24 Identity = 74/213 (34.74%), Postives = 113/213 (53.05%), Query Frame = 1 Query: 7 GPLIRAQRKGAGSVFLSHT---HHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 G + RA R +G + + H R+ +R +DF R+ + + VA I +DP R +A + +R K IA +G+ G + G A + +GN LP+ +IP G +V N+E ++G G L R +G YA+II+ D D VKLPSG ++I C A +G+V + KAG + ++ +R PKVRGVAMNP++HP Sbjct: 37 GKVSRAGRDSSGRISVRRRGGGHKRR----YREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHP 233
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23 Identity = 73/211 (34.60%), Postives = 105/211 (49.76%), Query Frame = 1 Query: 13 LIRAQRKGAGSVFLSHT--HHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 L+ RK AG F HR G + +R +DF + G VA I +DP R A +A V + +K +A G+ GQ + G +A + VGN LP+R+IP G ++ N+E + G + R++G A +++ + D V+LPSG ++ P CRA IGQV + KAG A P VRGV MNPV+HP Sbjct: 33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYADG-----EKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARW-----LGIRPTVRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.102e-23 Identity = 66/183 (36.07%), Postives = 96/183 (52.46%), Query Frame = 1 Query: 85 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 Q+R +DF + VV + +DP R A +A V ++ ++ +AA+G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + IP+ CRA +G+V + L KAG A R P VRG AMNPV+HP Sbjct: 61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.319e-22 Identity = 71/207 (34.30%), Postives = 111/207 (53.62%), Query Frame = 1 Query: 16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 I +R+G G H RK +R +DF R+ + + VA I +DP R A +A + ++ +K I+ +G+ G + G A + +GN LP+ +IP G + N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + ++ +R PKVRGVAMNPV+HP Sbjct: 50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHP 233
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22 Identity = 72/207 (34.78%), Postives = 111/207 (53.62%), Query Frame = 1 Query: 16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 I +R+G G H RK +R +DF R+ + + VA I +DP R A +A + ++ +K I+ +G+ G + G A + +GN LP+ +IP G V N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + ++ +R PKVRGVAMNPV+HP Sbjct: 50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDHP 233
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22 Identity = 72/207 (34.78%), Postives = 111/207 (53.62%), Query Frame = 1 Query: 16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 I +R+G G H RK +R +DF R+ + + VA I +DP R A +A + ++ +K I+ +G+ G + G A + +GN LP+ +IP G V N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + ++ +R PKVRGVAMNPV+HP Sbjct: 50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDHP 233
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22 Identity = 64/183 (34.97%), Postives = 94/183 (51.37%), Query Frame = 1 Query: 85 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 Q+R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + S CRA +G+V + L KAG A R P VRG AMNPV+HP Sbjct: 61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHP 231 The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bpback to top |