CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:79..424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.935e-35
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            EQTFIMIKPDGVQRGLVGEII  FEKKGF LKGLK + V+R FA+KHY DLS+KPFF   ++YI SGPVVAMI EG+ VV TGR IIGATNPAQS
Sbjct:    3 EQTFIMIKPDGVQRGLVGEIISRFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQS 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.062e-33
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME TFIMIKPDGVQRGL+GEII  FEKKGF LK LKL+ V+R FA+KHY DLSSKPFF   ++YI SGPVVAM+ EG+ VV TGR IIGATNP  S
Sbjct:    1 MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVS 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.461e-32
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            MEQ+FIMIKPDGVQRGL+G+II  FEKKGF L+G+K M V+R FA +HY DLS KPFF   +EYI SGPVVAM+ EG+ VV TGR IIGAT P ++A
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.461e-32
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            MEQ+FIMIKPDGVQRGL+G+II  FEKKGF L+G+K M V+R FA +HY DLS KPFF   +EYI SGPVVAM+ EG+ VV TGR IIGAT P ++A
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.453e-30
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 3
Query:   42 NLKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +++E+E+T+IMIKPDGVQRGLVGEII  FEKKGF L GLKL    +  A++HY+DL SKPFF   I+YITSGPVV M  EG GVV + R +IGATNP
Sbjct:   80 SMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNP 176          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_TRIEI (Nucleoside diphosphate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.616e-29
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TFI IKPDGVQRGLVG+II  FE KGF+L GLK+MTV +  A+KHY+    +PFF S IE+I SGP+VAM+ EGEGVV + R IIGATNP
Sbjct:    1 MERTFIAIKPDGVQRGLVGQIISRFETKGFTLVGLKIMTVTKELAEKHYDVHKERPFFSSLIEFIKSGPLVAMVWEGEGVVASARKIIGATNP 93          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_CYAA5 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain ATCC 51142) GN=ndk PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.874e-29
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TFIMIKPDGVQRGLVGE+I  FE KGF+L GLKLM+V +  A++HY+    +PFFGS +E+I S PVVAM+ EG+GVV + R +IGATNP
Sbjct:    1 MERTFIMIKPDGVQRGLVGEVIGRFEAKGFTLVGLKLMSVSKELAEEHYDVHKERPFFGSLVEFICSSPVVAMVWEGDGVVASARKLIGATNP 93          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=ndk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.754e-28
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF+ +KPDGVQRGLVGEII  +E KGF+L GLKLM V R  A++HY +   KPFF   +++ITSGPVVAM+ EG+GVV   R IIGATNP  S
Sbjct:    1 MERTFLAVKPDGVQRGLVGEIISRYEAKGFTLVGLKLMVVSRELAEQHYGEHKEKPFFSGLVDFITSGPVVAMVWEGKGVVAAARKIIGATNPLGS 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.754e-28
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   51 EMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            EME+TFI IKPDGVQRGL+ EII  FE+KG+ L G+K+M   + FA KHY DL  +PFF     +++SGPVVAM+ EGEGV+  GR +IGAT+P +S
Sbjct:   86 EMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKS 182          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.754e-28
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   51 EMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E E+TFI IKPDGVQRGL+ EI+  FE+KGFSL  +K++   RPFA KHY DL  KPF+   + Y +SGPVVAM+ EGEGV+  GR +IGAT+P +S
Sbjct:    2 EFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKYGRKLIGATDPQKS 98          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_PEA1.935e-3576.84Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDK1_SACOF1.062e-3372.92Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK1_ORYSJ4.461e-3268.04Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI4.461e-3268.04Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK2_TOBAC5.453e-3064.95Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_TRIEI4.616e-2966.67Nucleoside diphosphate kinase OS=Trichodesmium ery... [more]
NDK_CYAA57.874e-2964.52Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_ACAM11.754e-2862.50Nucleoside diphosphate kinase OS=Acaryochloris mar... [more]
NDK4_ARATH1.754e-2858.76Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK3_SPIOL1.754e-2859.79Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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