CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAEQ (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPD VQR L+GEII   EKKG  L G K M V    A+KHY +   KPF+   I +ITS PV AM+ EGE  V   R IIG+TNP+++A
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLISFITSAPVFAMVVEGENAVAVSRKIIGSTNPSEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PYRFU (Nucleoside diphosphate kinase OS=Pyrococcus furiosus GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   45 LKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            + E+E+T ++IKPD V RGL+GEII  FEKKG  + G+K++ +DR  A+KHYE+   KPFF + I+YIT  PVV M+ EG   V   R + GAT+P  +A
Sbjct:    1 MNEVERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHKGKPFFEALIDYITKAPVVVMVVEGRYAVEVVRKMAGATDPKDAA 100          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PROM0 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRG V EII  FEKKGF L GLK +   +  A  HY     +PFFG  +++I+SGPVVAM+ EGEGV+ + R +IG+T P ++
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGSTKPLEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_METKA (Nucleoside diphosphate kinase OS=Methanopyrus kandleri GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:   45 LKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            + E+++ F+MIKPDGV RGLVGE+I   E+KG  +  L++  +DR  A+K YE+   KPFF   IEY+TSGPVV MI EG   V   R IIGAT+PA++A
Sbjct:    1 MAEVQREFVMIKPDGVVRGLVGEVIRRLERKGLKIVALEMRQLDRETAEKLYEEHRDKPFFEDLIEYVTSGPVVVMIVEGRKAVKVVRNIIGATDPAEAA 100          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_LISW6 (Nucleoside diphosphate kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 49/96 (51.04%), Postives = 68/96 (70.83%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQT++M+KPDGV+RGL+GEI+   EKKG  L   KL+ +DR  A++HY +   KPFF   I +ITSGPV AM+ EG+ V+   R ++G TNP ++
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVAKIEKKGIKLVAGKLIQIDRKLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKIARRMMGKTNPLEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_FRASC (Nucleoside diphosphate kinase OS=Frankia sp. (strain CcI3) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 48/97 (49.48%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T I++KPDGV RGLVGE++   E+KG +L  L+L T++R  A+ HY + +SKPFFG  +++ITSGP+VA++ EG   V   R +IGAT+P ++A
Sbjct:    3 VERTLILVKPDGVSRGLVGEVVGRLERKGLTLVALELRTLERSVAETHYGEHASKPFFGELVDFITSGPLVALVAEGPRAVEASRGLIGATDPVKAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DEIGD (Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=ndk PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF MIKPDGV+RGL  EI+   +KKG+ + GLK M + R  A++HY +   +PFFG  +++ITSGPVVA+  EGE  +   R ++GATNPA +A
Sbjct:    1 MERTFAMIKPDGVRRGLTPEILARIQKKGYRVVGLKQMLISRELAERHYAEHRERPFFGELVDFITSGPVVAIALEGENAIAGWRAMMGATNPANAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.898e-23
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   51 EMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            + E+TFI +KPDGVQRGLV +I+  FEKKG+ L  +KL+  D    ++HY +   KPFF   + ++ SGP++A + EG+ VV  GRTI+GATNP  SA
Sbjct:    4 QTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSA 101          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_LISMO (Nucleoside diphosphate kinase OS=Listeria monocytogenes GN=ndk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.898e-23
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQT++M+KPDGV+RGL+GEI+   EKKG  +   KLM +DR  A+KHY +   K FF   I +ITSGPV AM+ EG+  + T R ++G TNP ++
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.898e-23
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQT++M+KPDGV+RGL+GEI+   EKKG  +   KLM +DR  A+KHY +   K FF   I +ITSGPV AM+ EG+  + T R ++G TNP ++
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEA 96          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAEQ1.699e-2354.64Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_PYRFU1.699e-2350.00Nucleoside diphosphate kinase OS=Pyrococcus furios... [more]
NDK_PROM01.699e-2354.74Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_METKA1.699e-2353.00Nucleoside diphosphate kinase OS=Methanopyrus kand... [more]
NDK_LISW61.699e-2351.04Nucleoside diphosphate kinase OS=Listeria welshime... [more]
NDK_FRASC1.699e-2349.48Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_DEIGD1.699e-2351.55Nucleoside diphosphate kinase OS=Deinococcus geoth... [more]
NDK_YEAST2.898e-2350.00Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]
NDK_LISMO2.898e-2351.04Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMH2.898e-2351.04Nucleoside diphosphate kinase OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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