CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.898e-23
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQT++M+KPDGV+RGL+GEI+   EKKG  +   KLM +DR  A+KHY +   K FF   I +ITSGPV AM+ EG+  + T R ++G TNP ++
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEA 96
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_LISMC (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.898e-23
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQT++M+KPDGV+RGL+GEI+   EKKG  +   KLM +DR  A+KHY +   K FF   I +ITSGPV AM+ EG+  + T R ++G TNP ++
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEA 96
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 3 
Query:   51 EMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            E E+TF+M+KPDGVQRGLVGEII  FE++G  + G+K++ V    A +HY + ++KPFF   + +I SGP VAM+ EG+  V+  R+++G T P +SA
Sbjct:    3 ERERTFVMVKPDGVQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGPTVAMVIEGKDAVSMVRSMLGKTKPIESA 100
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAAW (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MW2) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPD VQR L+GE+I   E+KG  L G KLM V    A+ HY +   KPF+   I +ITS PV AM+ EGE  VN  R IIG+TNP++++
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAAU (Nucleoside diphosphate kinase OS=Staphylococcus aureus GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPD VQR L+GE+I   E+KG  L G KLM V    A+ HY +   KPF+   I +ITS PV AM+ EGE  VN  R IIG+TNP++++
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAAT (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPD VQR L+GE+I   E+KG  L G KLM V    A+ HY +   KPF+   I +ITS PV AM+ EGE  VN  R IIG+TNP++++
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAAS (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MSSA476) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPD VQR L+GE+I   E+KG  L G KLM V    A+ HY +   KPF+   I +ITS PV AM+ EGE  VN  R IIG+TNP++++
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAAR (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MRSA252) GN=ndk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPD VQR L+GE+I   E+KG  L G KLM V    A+ HY +   KPF+   I +ITS PV AM+ EGE  VN  R IIG+TNP++++
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAAN (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain N315) GN=ndk PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPD VQR L+GE+I   E+KG  L G KLM V    A+ HY +   KPF+   I +ITS PV AM+ EGE  VN  R IIG+TNP++++
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97
[Close]
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAAM (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ndk PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 3 
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPD VQR L+GE+I   E+KG  L G KLM V    A+ HY +   KPF+   I +ITS PV AM+ EGE  VN  R IIG+TNP++++
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_LISMF2.898e-2351.04Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMC2.898e-2351.04Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_UNCMA4.943e-2348.98Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK_STAAW4.943e-2352.58Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAU4.943e-2352.58Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAT4.943e-2352.58Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAS4.943e-2352.58Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAR4.943e-2352.58Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAN4.943e-2352.58Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAM4.943e-2352.58Nucleoside diphosphate kinase OS=Staphylococcus au... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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