CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:79..424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.485e-27
Identity = 53/97 (54.64%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+M+KPDGVQR L+GEI+  FEKKG+ L G KLMTV R  A++HY +   +PFFG  +++ITSGPV AM+ +G  V+ T R ++G TNP  +A
Sbjct:    1 MEKTFLMVKPDGVQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELVDFITSGPVFAMVWQGNNVITTARAMMGKTNPVDAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.485e-27
Identity = 58/100 (58.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:   42 NLKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +++++E+T+IMIKPDGVQRGLVGEII  FEKKGF L GLK+    +  A++HY+DL +K F+   I+YITSGPVV M  EG GVV + R +IGAT+P Q+
Sbjct:   81 SMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQA 180          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_NEUCR (Nucleoside diphosphate kinase OS=Neurospora crassa GN=ndk-1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.939e-27
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   45 LKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +   EQTFI +KPDGVQRGLVG II  FE +GF L  +KL    +   +KHYEDL++KPFF   I+Y+ SGP+ AM+ EG+  V TGRTI+GATNP  SA
Sbjct:    1 MSNQEQTFIAVKPDGVQRGLVGNIISRFENRGFKLVAMKLTQPGQAHLEKHYEDLNTKPFFAGLIKYMNSGPICAMVWEGKDAVKTGRTILGATNPLASA 100          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.939e-27
Identity = 53/97 (54.64%), Postives = 77/97 (79.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+T++M+KPDGVQRGL+G+II  FE+KG+ + GLK+M + R  A++HY + + KPFF   +++ITSGPVVAM+ EG+ VV T R ++GATNP ++A
Sbjct:    1 MERTYLMVKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVVTTAREMMGATNPLKAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_EMENI (Nucleoside diphosphate kinase OS=Emericella nidulans GN=swoH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.533e-27
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            EQTFI IKPDGVQRGLVG II  FE +GF L  +KL +  R   ++HY DL  KPFF   + Y+ SGP+VAM+ EG+ VV TGRTI+GATNP  SA
Sbjct:    4 EQTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGLVTYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNY3 (Nucleoside diphosphate kinase OS=Synechocystis sp. (strain PCC 6803) GN=ndk PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.308e-27
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TFIMIKPDGVQR L+GEI+  FEKKGF L  +K+MTV +  A+KHYE L+ KPFF   + +I S PVVAM+ EG  +V+T R +IGAT+P  +A
Sbjct:    1 MERTFIMIKPDGVQRQLIGEIVGRFEKKGFKLVAMKVMTVSQELAEKHYEALNDKPFFSGLVNFICSSPVVAMVWEGNSIVSTSRQMIGATDPHAAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DESAP (Nucleoside diphosphate kinase OS=Desulforudis audaxviator (strain MP104C) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.308e-27
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            M++TF+M+KPDGVQRGLVGE+I  FE++GF L  LKL+ +DR  A++HYE+   KPFF   + YITSGPV AM+ EG  VV T R ++GAT PA++
Sbjct:    1 MDRTFVMVKPDGVQRGLVGEVITRFERRGFKLVALKLLWIDRGLAERHYEEHRGKPFFDELVRYITSGPVAAMVLEGREVVTTVREMMGATQPAKA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.320e-27
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            E+TFIM+KPDGVQR L+GEI+  FEKKGF L G KLM V R  A++HY +   +PFFG  +++ITSGPV AM+ EGE V+   R ++G TNP ++A
Sbjct:    3 ERTFIMVKPDGVQRNLIGEIVARFEKKGFQLVGAKLMQVSRELAEQHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIAAARQMMGKTNPQEAA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.320e-27
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TF+ IKPDGVQRGLVGEII  FE KGF+L GLK + V +  A++HY     +PFF S +E+ITSGPVVAM+ EG+GV+ + R IIGATNP
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNP 93          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.320e-27
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TF+ IKPDGVQRGLVGEII  FE KGF+L GLK + V +  A++HY     +PFF S +E+ITSGPVVAM+ EG+GV+ + R IIGATNP
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNP 93          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BREBN1.485e-2754.64Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]
NDK2_SPIOL1.485e-2758.00Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_NEUCR1.939e-2757.00Nucleoside diphosphate kinase OS=Neurospora crassa... [more]
NDK_DESRM1.939e-2754.64Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_EMENI2.533e-2760.42Nucleoside diphosphate kinase OS=Emericella nidula... [more]
NDK_SYNY33.308e-2758.76Nucleoside diphosphate kinase OS=Synechocystis sp.... [more]
NDK_DESAP3.308e-2757.29Nucleoside diphosphate kinase OS=Desulforudis auda... [more]
NDK_GEOKA4.320e-2756.25Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDK_ANAVT4.320e-2762.37Nucleoside diphosphate kinase OS=Anabaena variabil... [more]
NDK_ANASP4.320e-2762.37Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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