CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_NOCSJ (Nucleoside diphosphate kinase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 35/95 (36.84%), Postives = 64/95 (67.37%), Query Frame = 3
Query:   60 QTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +T +++KPD V+RGLVG I+  +E KG ++  ++  T+D   AD+HY +  +K F+    +++T GP+VA++ EG+  V+  R + GAT+ +++A
Sbjct:    4 RTLVLLKPDAVRRGLVGAILSRYEAKGLTIVAMEQRTIDAAVADQHYAEHVAKEFYPPLRDFVTGGPLVALVLEGDNSVDVVRLLNGATDGSKAA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_HYPNA (Nucleoside diphosphate kinase OS=Hyphomonas neptunium (strain ATCC 15444) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +++TF +IKPD  +R L G I    EK G  + G + + + R  A++ Y   S++PFFG  ++++ SGPVV  + E E  +   R ++GATNPA +A
Sbjct:    3 VQRTFSIIKPDATERNLTGAINAVIEKAGLRIVGQRRIQMTRAQAERFYSVHSARPFFGELVDFMISGPVVVQVLEAEDAITKYREVMGATNPADAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_GRAFK (Nucleoside diphosphate kinase OS=Gramella forsetii (strain KT0803) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   60 QTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +TF MIKPD V+ G +G I+      GF +  LKL  + +  A+  Y   + +PFFG  +E++T GP+VA I E +  V   RT+IGATNP  +A
Sbjct:    5 RTFTMIKPDAVENGHIGGILDQITASGFRIVALKLTQMTQRDAETFYAVHNERPFFGELVEFMTRGPIVAAILEKDNAVEDFRTLIGATNPEDAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_GEOSL (Nucleoside diphosphate kinase OS=Geobacter sulfurreducens GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF +IKPD V+R ++G+I+   E  GF + G+K + + +  A+  Y     +PFF     +++  PVV M+ E E  +NT R ++GATNPA +
Sbjct:    1 MERTFAIIKPDAVERNIIGKILEKVETAGFRIVGMKKILLSKCEAEGFYYVHKERPFFNDLCSFMSRSPVVVMVLERENAINTWREVMGATNPANA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ERWCT (Nucleoside diphosphate kinase OS=Erwinia carotovora subsp. atroseptica GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF ++KP+ V +  +G I   FE  GF++   K++ + R  A+  Y +   KPFF   +E++ SGP++    EGE  V   R I+GATNPA +
Sbjct:    3 IERTFSIVKPNAVAKNAIGAIYARFESAGFTIVASKMLRLSREQAEGFYAEHKGKPFFDGLVEFMMSGPIMVQALEGENAVQRNRDIMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ENT38 (Nucleoside diphosphate kinase OS=Enterobacter sp. (strain 638) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFESAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_AZOVD (Nucleoside diphosphate kinase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+T  +IKPD V + ++GEI+  FEK G S+   K++ +    A   Y +   +PFF   + ++TSGPVV  + EGEG +   R ++GAT+P ++
Sbjct:    3 VERTLSIIKPDAVAKNVIGEILTRFEKAGLSVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEGAIAKNRELMGATDPKKA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ALCBS (Nucleoside diphosphate kinase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ndk PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+T  +IKPD V + ++GEI+  FEK G S+  +K++ +    A   Y +   +PFF   + ++TSGPVV  + EGE  V   R ++GATNP ++
Sbjct:    3 VERTLSIIKPDAVAKNVIGEIVTRFEKAGLSVVAMKMVHLSDEKAGGFYAEHKERPFFKDLVGFMTSGPVVVQVLEGEDAVAKNRDLMGATNPKEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SODGM (Nucleoside diphosphate kinase OS=Sodalis glossinidius (strain morsitans) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G II  FE  G ++ G K++ + R  A+  Y +   KPFF S ++++ SGP++  + EGE  V   R I+GATN A +
Sbjct:    3 IERTFSIIKPNAVAKNVIGAIIQRFESTGLTVVGAKMLQLTREQAEGFYAEHKGKPFFDSLVDFMISGPILVQVLEGEDAVRRNREIMGATNLANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SHEPW (Nucleoside diphosphate kinase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD V +  +G I   FE  G  +   K++ + +  A+  Y + S +PFFG+ + ++TSGP++    EGE  V   R I+GATNPA++A
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAA 99          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_NOCSJ6.471e-1536.84Nucleoside diphosphate kinase OS=Nocardioides sp. ... [more]
NDK_HYPNA6.471e-1538.14Nucleoside diphosphate kinase OS=Hyphomonas neptun... [more]
NDK_GRAFK6.471e-1542.11Nucleoside diphosphate kinase OS=Gramella forsetii... [more]
NDK_GEOSL6.471e-1538.54Nucleoside diphosphate kinase OS=Geobacter sulfurr... [more]
NDK_ERWCT6.471e-1537.50Nucleoside diphosphate kinase OS=Erwinia carotovor... [more]
NDK_ENT386.471e-1538.54Nucleoside diphosphate kinase OS=Enterobacter sp. ... [more]
NDK_AZOVD6.471e-1537.50Nucleoside diphosphate kinase OS=Azotobacter vinel... [more]
NDK_ALCBS6.471e-1538.54Nucleoside diphosphate kinase OS=Alcanivorax borku... [more]
NDK_SODGM8.451e-1538.54Nucleoside diphosphate kinase OS=Sodalis glossinid... [more]
NDK_SHEPW8.451e-1539.18Nucleoside diphosphate kinase OS=Shewanella piezot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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