CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALNS (Nucleoside diphosphate kinase OS=Salmonella newport (strain SL254) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALHS (Nucleoside diphosphate kinase OS=Salmonella heidelberg (strain SL476) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALG2 (Nucleoside diphosphate kinase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALEP (Nucleoside diphosphate kinase OS=Salmonella enteritidis PT4 (strain P125109) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALDC (Nucleoside diphosphate kinase OS=Salmonella dublin (strain CT_02021853) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALA4 (Nucleoside diphosphate kinase OS=Salmonella agona (strain SL483) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RICFE (Nucleoside diphosphate kinase OS=Rickettsia felis GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ++ TF MIKPD ++R  +G++    E  G  +   K+  + +  A+  Y++  ++PFF S +EYITSG VV  + +GE  +   RTI+GATNPA++
Sbjct:    3 IQYTFSMIKPDAIKRNKIGQVNTYLENAGLKIVAQKMKFLTKYEAECFYDEHRARPFFNSLVEYITSGAVVLQVLKGEDAIILNRTIMGATNPAEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PSEPG (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain GB-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 35/97 (36.08%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +++TF +IKPD V + ++G+I   FE+ G  +   K+  + +  A+  Y + S++ FFG  + ++TSGPVV  + EGE  +   R ++GATNP ++A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PSEE4 (Nucleoside diphosphate kinase OS=Pseudomonas entomophila (strain L48) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 35/97 (36.08%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +++TF +IKPD V + ++G+I   FE+ G  +   K+  + +  A+  Y + S++ FFG  + ++TSGPVV  + EGE  +   R ++GATNP ++A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_METSB (Nucleoside diphosphate kinase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD  +R L G I    EK G  +   K + + RP A+  Y     +PFFG+ ++ + SGPVV  + EGE  +   R ++GAT+PA++A
Sbjct:    3 IERTFSIIKPDATRRNLTGAINALIEKAGLRIIAQKRVQITRPQAETFYAVHKERPFFGALVDTMISGPVVVQVLEGENAIKAYRDVLGATDPAKAA 99          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SALNS8.451e-1538.54Nucleoside diphosphate kinase OS=Salmonella newpor... [more]
NDK_SALHS8.451e-1538.54Nucleoside diphosphate kinase OS=Salmonella heidel... [more]
NDK_SALG28.451e-1538.54Nucleoside diphosphate kinase OS=Salmonella gallin... [more]
NDK_SALEP8.451e-1538.54Nucleoside diphosphate kinase OS=Salmonella enteri... [more]
NDK_SALDC8.451e-1538.54Nucleoside diphosphate kinase OS=Salmonella dublin... [more]
NDK_SALA48.451e-1538.54Nucleoside diphosphate kinase OS=Salmonella agona ... [more]
NDK_RICFE8.451e-1538.54Nucleoside diphosphate kinase OS=Rickettsia felis ... [more]
NDK_PSEPG8.451e-1536.08Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEE48.451e-1536.08Nucleoside diphosphate kinase OS=Pseudomonas entom... [more]
NDK_METSB8.451e-1539.18Nucleoside diphosphate kinase OS=Methylocella silv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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