CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PSEP1 (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +++TF +IKPD V + ++G+I   FE+ G  +   K+  + +  A+  Y + S + FFG  + ++TSGPVV  + EGE  +   R ++GATNP ++A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PSEF5 (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/97 (36.08%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +++TF +IKPD V + ++G+I+  FE+ G  +   K+  + +  A+  Y + S + FFG  + ++TSGPVV  + EGE  +   R ++GATNP ++A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKIVSRFEEAGLRVVASKMKQLSKAEAEGFYAEHSERGFFGELVAFMTSGPVVVQVLEGENAIVRNRELMGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_MARAV (Nucleoside diphosphate kinase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+T  +IKPD V + ++GEI   FEK    +   K+M + +  A+  Y +   +PFF   + ++TSGPVV  + EGEG +   R ++GATNP ++
Sbjct:    4 ERTLSIIKPDAVAKNVIGEIYSRFEKADLKIVAAKMMHLTQEQAEGFYAEHKERPFFNDLVAFMTSGPVVVQVLEGEGAILKNRELMGATNPKEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_HAES2 (Nucleoside diphosphate kinase OS=Haemophilus somnus (strain 2336) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +EQT  +IKPD V+R L+G II   E KGF +  +K++ +++  A+  Y +  +K FF   ++Y+TS P+V ++ + E  V   RT +G TNP
Sbjct:    3 LEQTLAIIKPDAVERNLIGNIISRLEDKGFQIIAMKMLHLNQEQAEGFYAEHRNKAFFTELVKYMTSAPIVVLVLQKENAVKDYRTFMGTTNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUSU (Nucleoside diphosphate kinase OS=Brucella suis GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUSI (Nucleoside diphosphate kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUO2 (Nucleoside diphosphate kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYTVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUME (Nucleoside diphosphate kinase OS=Brucella melitensis GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUMB (Nucleoside diphosphate kinase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUC2 (Nucleoside diphosphate kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PSEP11.104e-1436.08Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEF51.104e-1436.08Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_MARAV1.104e-1437.89Nucleoside diphosphate kinase OS=Marinobacter aqua... [more]
NDK_HAES21.104e-1438.71Nucleoside diphosphate kinase OS=Haemophilus somnu... [more]
NDK_BRUSU1.104e-1439.58Nucleoside diphosphate kinase OS=Brucella suis GN=... [more]
NDK_BRUSI1.104e-1439.58Nucleoside diphosphate kinase OS=Brucella suis (st... [more]
NDK_BRUO21.104e-1439.58Nucleoside diphosphate kinase OS=Brucella ovis (st... [more]
NDK_BRUME1.104e-1439.58Nucleoside diphosphate kinase OS=Brucella melitens... [more]
NDK_BRUMB1.104e-1439.58Nucleoside diphosphate kinase OS=Brucella melitens... [more]
NDK_BRUC21.104e-1439.58Nucleoside diphosphate kinase OS=Brucella canis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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