CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUAB (Nucleoside diphosphate kinase OS=Brucella abortus GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUA2 (Nucleoside diphosphate kinase OS=Brucella abortus (strain 2308) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRUA1 (Nucleoside diphosphate kinase OS=Brucella abortus (strain S19) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G II   E+ G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +
Sbjct:    3 IERTFSMIKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACTP2 (Nucleoside diphosphate kinase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/95 (37.89%), Postives = 60/95 (63.16%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQ 338
            ++QT  +IKPD  QR L+G+I+   E+ G ++K LK + +++  A+  Y +   K FF   +E++ S P+VA++ EGE  +   R ++GATNP Q
Sbjct:    2 IQQTLCLIKPDATQRNLIGKILSHLEEAGLTIKALKKVQLNQEQAEGFYAEHQGKEFFAPLVEFMISAPIVAVVLEGENAIAHYRELMGATNPEQ 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_MERBI (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius bilinearis GN=nme2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQTFI IKPDGVQRGL GE+          +K ++ M        KHY DL   PF+    +Y++SGPV AM+ EGEG+V   + ++G TNPA S
Sbjct:    1 MEQTFIAIKPDGVQRGLCGEV----------MKFIQPM--------KHYLDLKDMPFYAGLCKYMSSGPVFAMVWEGEGIV---KMMLGETNPADS 75          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RICRS (Nucleoside diphosphate kinase OS=Rickettsia rickettsii (strain Sheila Smith) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ++ TF MIKPD ++R  +G++    E  G  +   K+  + +  A   Y++  ++PFF S +EYITSG VV  + +GE  +   RT++GATNPA++
Sbjct:    3 IQYTFSMIKPDAIKRNKIGQVNTYLENAGLKIVAQKMKFLTKYEAACFYDEHRARPFFNSLVEYITSGAVVLQVLKGEDAITLNRTVMGATNPAEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RICRO (Nucleoside diphosphate kinase OS=Rickettsia rickettsii (strain Iowa) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ++ TF MIKPD ++R  +G++    E  G  +   K+  + +  A   Y++  ++PFF S +EYITSG VV  + +GE  +   RT++GATNPA++
Sbjct:    3 IQYTFSMIKPDAIKRNKIGQVNTYLENAGLKIVAQKMKFLTKYEAACFYDEHRARPFFNSLVEYITSGAVVLQVLKGEDAITLNRTVMGATNPAEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RICPU (Nucleoside diphosphate kinase OS=Rickettsia peacockii (strain Rustic) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ++ TF MIKPD ++R  +G++    E  G  +   K+  + +  A   Y++  ++PFF S +EYITSG VV  + +GE  +   RT++GATNPA++
Sbjct:    3 IQYTFSMIKPDAIKRNKIGQVNTYLENAGLKIVAQKMKFLTKYEAACFYDEHRARPFFNSLVEYITSGAVVLQVLKGEDAITLNRTVMGATNPAEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RICCN (Nucleoside diphosphate kinase OS=Rickettsia conorii GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ++ TF MIKPD ++R  +G++    E  G  +   K+  + +  A   Y++  ++PFF S +EYITSG VV  + +GE  +   RT++GATNPA++
Sbjct:    3 IQYTFSMIKPDAIKRNKIGQVNTYLENAGLKIVAQKMKFLTKYEAACFYDEHRARPFFNSLVEYITSGAVVLQVLKGEDAITLNRTVMGATNPAEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RICAE (Nucleoside diphosphate kinase OS=Rickettsia africae (strain ESF-5) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ++ TF MIKPD ++R  +G++    E  G  +   K+  + +  A   Y++  ++PFF S +EYITSG VV  + +GE  +   RT++GATNPA++
Sbjct:    3 IQYTFSMIKPDAIKRNKIGQVNTYLENAGLKIVAQKMKFLTKYEAACFYDEHRARPFFNSLVEYITSGAVVLQVLKGEDAITLNRTVMGATNPAEA 98          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BRUAB1.104e-1439.58Nucleoside diphosphate kinase OS=Brucella abortus ... [more]
NDK_BRUA21.104e-1439.58Nucleoside diphosphate kinase OS=Brucella abortus ... [more]
NDK_BRUA11.104e-1439.58Nucleoside diphosphate kinase OS=Brucella abortus ... [more]
NDK_ACTP21.104e-1437.89Nucleoside diphosphate kinase OS=Actinobacillus pl... [more]
NDKB_MERBI1.104e-1446.88Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDK_RICRS1.442e-1437.50Nucleoside diphosphate kinase OS=Rickettsia ricket... [more]
NDK_RICRO1.442e-1437.50Nucleoside diphosphate kinase OS=Rickettsia ricket... [more]
NDK_RICPU1.442e-1437.50Nucleoside diphosphate kinase OS=Rickettsia peacoc... [more]
NDK_RICCN1.442e-1437.50Nucleoside diphosphate kinase OS=Rickettsia conori... [more]
NDK_RICAE1.442e-1437.50Nucleoside diphosphate kinase OS=Rickettsia africa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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