CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RHIEC (Nucleoside diphosphate kinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF MIKPD  +R L G I    E  G  +   K + + R  A+  Y     +PFFG  +E +TSGP V  + EGEG +   R I+GATNPA +A
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPANAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PSEPF (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/97 (37.11%), Postives = 60/97 (61.86%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +++TF +IKPD V + ++G+I   FE  G  +   KL  + +  A+  Y + S++ FFG  + ++TSGPVV  + EGE  +   R ++GATNP ++A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEDAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGELVAFMTSGPVVVQVLEGENAIARNRELMGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_GEOSM (Nucleoside diphosphate kinase OS=Geobacter sp. (strain M21) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 35/96 (36.46%), Postives = 60/96 (62.50%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF +IKPD V+R + G+++   E+ GF + G+K + + +  A+  Y     +PFFG    +++ GPV+A++ E E  +   R ++GATNPA +
Sbjct:    1 MERTFAIIKPDAVERNVTGKVLAMIEEGGFKIVGMKKIRLSKCQAEGFYYVHKERPFFGDLCAFMSRGPVIALVLEKENAIADWRALMGATNPANA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_AGRRK (Nucleoside diphosphate kinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF MIKPD  +R L G I   FE  G  +   K + + +  A+  Y     +PFFG  ++ +TSGP V  + EGEG +   R I+GATNPA +A
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKIFEDNGLRVIASKRVWMSKREAEGFYAVHKERPFFGELVDGMTSGPTVVQVLEGEGAILKNREIMGATNPANAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACIF5 (Nucleoside diphosphate kinase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  +IKPD VQ+  +G I+  FEK G  +   K++ + R  A   Y    ++PF+G   ++++SGPV+  + EGEG +   R ++GATNP  +A
Sbjct:    3 VERTLSIIKPDAVQKNAIGAILGRFEKAGLRIAAAKMLHLSRDDAGGFYAVHQARPFYGELCDFMSSGPVLVTVLEGEGAIAKNRDLMGATNPKDAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACIF2 (Nucleoside diphosphate kinase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  +IKPD VQ+  +G I+  FEK G  +   K++ + R  A   Y    ++PF+G   ++++SGPV+  + EGEG +   R ++GATNP  +A
Sbjct:    3 VERTLSIIKPDAVQKNAIGAILGRFEKAGLRIAAAKMLHLSRDDAGGFYAVHQARPFYGELCDFMSSGPVLVTVLEGEGAIAKNRDLMGATNPKDAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_MERPR (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius productus GN=nme2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQTF+ IKPDGVQRGL GE+          +K ++ M        KHY DL   PF+    +Y++SGPV AM+ EGEG+V   + ++G TNPA S
Sbjct:    1 MEQTFVAIKPDGVQRGLCGEV----------MKFIQPM--------KHYLDLKDMPFYAGLCKYMSSGPVFAMVWEGEGIV---KMMLGETNPADS 75          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_MERHU (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius hubbsi GN=nme2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQTF+ IKPDGVQRGL GE+          +K ++ M        KHY DL   PF+    +Y++SGPV AM+ EGEG+V   + ++G TNPA S
Sbjct:    1 MEQTFVAIKPDGVQRGLCGEV----------MKFIQPM--------KHYLDLKDMPFYAGLCKYMSSGPVFAMVWEGEGIV---KMMLGETNPADS 75          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_MERGA (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius gayi GN=nme2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQTF+ IKPDGVQRGL GE+          +K ++ M        KHY DL   PF+    +Y++SGPV AM+ EGEG+V   + ++G TNPA S
Sbjct:    1 MEQTFVAIKPDGVQRGLCGEV----------MKFIQPM--------KHYLDLKDMPFYAGLCKYMSSGPVFAMVWEGEGIV---KMMLGETNPADS 75          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_MERAP (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius australis polylepis GN=nme2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQTF+ IKPDGVQRGL GE+          +K ++ M        KHY DL   PF+    +Y++SGPV AM+ EGEG+V   + ++G TNPA S
Sbjct:    1 MEQTFVAIKPDGVQRGLCGEV----------MKFIQPM--------KHYLDLKDMPFYAGLCKYMSSGPVFAMVWEGEGIV---KMMLGETNPADS 75          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_RHIEC1.442e-1442.27Nucleoside diphosphate kinase OS=Rhizobium etli (s... [more]
NDK_PSEPF1.442e-1437.11Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_GEOSM1.442e-1436.46Nucleoside diphosphate kinase OS=Geobacter sp. (st... [more]
NDK_AGRRK1.442e-1441.24Nucleoside diphosphate kinase OS=Agrobacterium rad... [more]
NDK_ACIF51.442e-1437.11Nucleoside diphosphate kinase OS=Acidithiobacillus... [more]
NDK_ACIF21.442e-1437.11Nucleoside diphosphate kinase OS=Acidithiobacillus... [more]
NDKB_MERPR1.442e-1445.83Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDKB_MERHU1.442e-1445.83Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDKB_MERGA1.442e-1445.83Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDKB_MERAP1.442e-1445.83Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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