CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_MERAA (Nucleoside diphosphate kinase B (Fragments) OS=Merluccius australis australis GN=nme2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQTF+ IKPDGVQRGL GE+          +K ++ M        KHY DL   PF+    +Y++SGPV AM+ EGEG+V   + ++G TNPA S
Sbjct:    1 MEQTFVAIKPDGVQRGLCGEV----------MKFIQPM--------KHYLDLKDMPFYAGLCKYMSSGPVFAMVWEGEGIV---KMMLGETNPADS 75          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_VIBSL (Nucleoside diphosphate kinase OS=Vibrio splendidus (strain LGP32) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF ++KPD V+R LVGEI    EK G  +   K++++    A   Y +   K FFG   E++TSGP++  + EGE  +   R ++G TNP ++A
Sbjct:    3 LERTFSIVKPDAVKRNLVGEIYHRIEKAGLQIIAAKMVSLTEAQASGFYAEHEGKEFFGPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALPC (Nucleoside diphosphate kinase OS=Salmonella paratyphi C (strain RKS4594) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP++  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPILVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALCH (Nucleoside diphosphate kinase OS=Salmonella choleraesuis GN=ndk PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP++  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPILVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PROA2 (Nucleoside diphosphate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 39/97 (40.21%), Postives = 61/97 (62.89%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+T  ++KPD V++ L+G +I   E+ GF +  +K   +    A + Y   S +PF+G  +E+++SGP V MI E E  V   RT+IGAT+PA++A
Sbjct:    1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTKLTAQTAGEFYAVHSQRPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PASMU (Nucleoside diphosphate kinase OS=Pasteurella multocida GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  +IKPD V+R L+G I+  FE+ GF +   K++ + +  A+  Y +   K FF   + Y+ S PV+A++ E E  V   RT+IGATNPA +A
Sbjct:    3 VERTLSLIKPDAVKRHLIGAILSRFEQAGFRVVAAKMLHLTQAQAEGFYAEHQDKAFFPELVAYMISAPVLALVLEKENAVKDYRTLIGATNPAVAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PARD8 (Nucleoside diphosphate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+T +++KP  VQRGL+GEI+  FEKKG  L G+K++ +      +HY  L  KPFF    + ++  PV+    EG   ++  RT+ G TN   +A
Sbjct:    1 MEKTLVILKPCTVQRGLIGEIVTRFEKKGLRLAGMKMVWLTDEILSEHYAHLKEKPFFQRIKDAMSVCPVIVCCWEGVDAIHVVRTLAGTTNGRNAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_HELHP (Nucleoside diphosphate kinase OS=Helicobacter hepaticus GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQT  +IKPD V++G++G+II  FE     +  +K + + R  A+  Y     +PFF   ++++ SGPVV M+ EG   V   R ++GATNP ++
Sbjct:    1 MEQTLSIIKPDAVKKGVIGKIIDRFESNNLRICAMKKLQLTRCDAEAFYAIHKERPFFKDLVDFMISGPVVVMVLEGNNAVMKNRDLMGATNPKEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_HAEIN (Nucleoside diphosphate kinase OS=Haemophilus influenzae GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            E+TF +IKPD V+R L+G I+  FE+ GF +   K++ + R  A+  Y +   K FF   +EY+ S P+V  + E E  V   RT+IG TNP  +A
Sbjct:    4 ERTFSIIKPDVVKRNLIGAILTRFEQNGFKIIASKMVRLTREQAEGFYAEHQGKEFFVPLVEYMMSSPIVVSVLEKENAVKDYRTLIGTTNPETAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DESVV (Nucleoside diphosphate kinase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD V+R L GE++   +  G  +  +K++ + +  A+  Y     +PFF S   Y+ SGPVV  + EGE  ++  R I+GATNPA +A
Sbjct:    2 VERTFSIIKPDAVERNLQGEVLAMIQGAGLKVVAMKMIHLTKAQAEGFYAVHRERPFFDSLTTYMCSGPVVCSVLEGENAISRYREIMGATNPANAA 98          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKB_MERAA1.442e-1445.83Nucleoside diphosphate kinase B (Fragments) OS=Mer... [more]
NDK_VIBSL1.883e-1438.14Nucleoside diphosphate kinase OS=Vibrio splendidus... [more]
NDK_SALPC1.883e-1437.50Nucleoside diphosphate kinase OS=Salmonella paraty... [more]
NDK_SALCH1.883e-1437.50Nucleoside diphosphate kinase OS=Salmonella choler... [more]
NDK_PROA21.883e-1440.21Nucleoside diphosphate kinase OS=Prosthecochloris ... [more]
NDK_PASMU1.883e-1440.21Nucleoside diphosphate kinase OS=Pasteurella multo... [more]
NDK_PARD81.883e-1439.18Nucleoside diphosphate kinase OS=Parabacteroides d... [more]
NDK_HELHP1.883e-1438.54Nucleoside diphosphate kinase OS=Helicobacter hepa... [more]
NDK_HAEIN1.883e-1440.63Nucleoside diphosphate kinase OS=Haemophilus influ... [more]
NDK_DESVV1.883e-1439.18Nucleoside diphosphate kinase OS=Desulfovibrio vul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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