CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DESVH (Nucleoside diphosphate kinase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD V+R L GE++   +  G  +  +K++ + +  A+  Y     +PFF S   Y+ SGPVV  + EGE  ++  R I+GATNPA +A
Sbjct:    2 VERTFSIIKPDAVERNLQGEVLAMIQGAGLKVVAMKMIHLTKAQAEGFYAVHRERPFFDSLTTYMCSGPVVCSVLEGENAISRYREIMGATNPANAA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_CAMLR (Nucleoside diphosphate kinase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+T  +IKPD V++G++G+I+  FE  G  +   K + +    A + Y     +PFF   +E++ SGPVV  + EG+  V   R ++GATNP ++A
Sbjct:    1 MEKTLSIIKPDAVKKGVIGQILTRFESNGLRIAATKKIQLSEKEAQEFYAVHKDRPFFKDLVEFMISGPVVVSVLEGKNAVLKNRELMGATNPKEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ARCB4 (Nucleoside diphosphate kinase OS=Arcobacter butzleri (strain RM4018) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            MEQT  +IKPD V + +VG+I+  FE  G  +   K + + +  A+  Y   +++PFF   +E++ SGPVV  + EGE  +   R ++GATNP ++A
Sbjct:    1 MEQTLSIIKPDAVAKNVVGKILDRFESAGLKIAATKKLQLSQADAEAFYAVHAARPFFKDLVEFMISGPVVVSVLEGENAMAKNRELMGATNPKEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACIBY (Nucleoside diphosphate kinase OS=Acinetobacter baumannii (strain AYE) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  ++KPD V +  +GEI   FEK G  +   K+  + +  A+  Y +   + FFG  + ++TSGPVV  + EGE  V   R I+GATNP ++A
Sbjct:    3 IERTLSIVKPDAVSKNHIGEIFARFEKAGLKIVATKMKHLSQADAEGFYAEHKERGFFGDLVAFMTSGPVVVSVLEGENAVLAHREILGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACIBT (Nucleoside diphosphate kinase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=ndk PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  ++KPD V +  +GEI   FEK G  +   K+  + +  A+  Y +   + FFG  + ++TSGPVV  + EGE  V   R I+GATNP ++A
Sbjct:    3 IERTLSIVKPDAVSKNHIGEIFARFEKAGLKIVATKMKHLSQADAEGFYAEHKERGFFGDLVAFMTSGPVVVSVLEGENAVLAHREILGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACIBS (Nucleoside diphosphate kinase OS=Acinetobacter baumannii (strain SDF) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  ++KPD V +  +GEI   FEK G  +   K+  + +  A+  Y +   + FFG  + ++TSGPVV  + EGE  V   R I+GATNP ++A
Sbjct:    3 IERTLSIVKPDAVSKNHIGEIFARFEKAGLKIVATKMKHLSQADAEGFYAEHKERGFFGDLVAFMTSGPVVVSVLEGENAVLAHREILGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACIBC (Nucleoside diphosphate kinase OS=Acinetobacter baumannii (strain ACICU) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  ++KPD V +  +GEI   FEK G  +   K+  + +  A+  Y +   + FFG  + ++TSGPVV  + EGE  V   R I+GATNP ++A
Sbjct:    3 IERTLSIVKPDAVSKNHIGEIFARFEKAGLKIVATKMKHLSQADAEGFYAEHKERGFFGDLVAFMTSGPVVVSVLEGENAVLAHREILGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACIB5 (Nucleoside diphosphate kinase OS=Acinetobacter baumannii (strain AB0057) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  ++KPD V +  +GEI   FEK G  +   K+  + +  A+  Y +   + FFG  + ++TSGPVV  + EGE  V   R I+GATNP ++A
Sbjct:    3 IERTLSIVKPDAVSKNHIGEIFARFEKAGLKIVATKMKHLSQADAEGFYAEHKERGFFGDLVAFMTSGPVVVSVLEGENAVLAHREILGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ACIB3 (Nucleoside diphosphate kinase OS=Acinetobacter baumannii (strain AB307-0294) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  ++KPD V +  +GEI   FEK G  +   K+  + +  A+  Y +   + FFG  + ++TSGPVV  + EGE  V   R I+GATNP ++A
Sbjct:    3 IERTLSIVKPDAVSKNHIGEIFARFEKAGLKIVATKMKHLSQADAEGFYAEHKERGFFGDLVAFMTSGPVVVSVLEGENAVLAHREILGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SALAR (Nucleoside diphosphate kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G +++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFEAAGFRIVGTRMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_DESVH1.883e-1439.18Nucleoside diphosphate kinase OS=Desulfovibrio vul... [more]
NDK_CAMLR1.883e-1437.11Nucleoside diphosphate kinase OS=Campylobacter lar... [more]
NDK_ARCB41.883e-1438.14Nucleoside diphosphate kinase OS=Arcobacter butzle... [more]
NDK_ACIBY1.883e-1438.14Nucleoside diphosphate kinase OS=Acinetobacter bau... [more]
NDK_ACIBT1.883e-1438.14Nucleoside diphosphate kinase OS=Acinetobacter bau... [more]
NDK_ACIBS1.883e-1438.14Nucleoside diphosphate kinase OS=Acinetobacter bau... [more]
NDK_ACIBC1.883e-1438.14Nucleoside diphosphate kinase OS=Acinetobacter bau... [more]
NDK_ACIB51.883e-1438.14Nucleoside diphosphate kinase OS=Acinetobacter bau... [more]
NDK_ACIB31.883e-1438.14Nucleoside diphosphate kinase OS=Acinetobacter bau... [more]
NDK_SALAR2.459e-1437.50Nucleoside diphosphate kinase OS=Salmonella arizon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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