CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_GEOBB (Nucleoside diphosphate kinase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 35/96 (36.46%), Postives = 60/96 (62.50%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF +IKPD V+R + G+++   E+ GF + G+K + + +  A+  Y     +PFFG    +++ GPV+A++ E E  +   R ++GATNPA +
Sbjct:    1 MERTFAIIKPDAVERNVTGKVLAMIEEGGFKIVGMKKIRLSKCQAEGFYYVHKERPFFGDLCAFMSRGPVIALVLEKENAIADWRGLMGATNPANA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_FLAJ1 (Nucleoside diphosphate kinase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 3
Query:   60 QTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +TF MIKPD V  G +G I+      GF +  LKL  +    A   Y   + +PF+G  +E+++ GP+VA I E +  V   RT+IGATNPA++A
Sbjct:    5 RTFTMIKPDAVANGHIGNILAMITNGGFKIVSLKLTQLTVADAKAFYAVHAERPFYGELVEFMSRGPIVAAILEKDNAVEDFRTLIGATNPAEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_CAMC1 (Nucleoside diphosphate kinase OS=Campylobacter concisus (strain 13826) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            M++T  +IKPD V++ +VG+II  FE  G  +   K + + +  A   Y     +PFF   ++++ SGPVV M+ EGE  V   R ++GATNP ++A
Sbjct:    1 MQRTLSIIKPDAVKKNVVGKIIDRFESNGLRIAAAKKIKLSKCDAKAFYAVHKDRPFFNDLVDFMVSGPVVVMVLEGENAVAKNRELMGATNPKEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_AZOC5 (Nucleoside diphosphate kinase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD  +R L G I    EK G  +   K + + +  A+  Y   S++PFF   + ++TSGPVV  + EGE  V   R ++GATNPA +A
Sbjct:    3 IERTFSIIKPDATRRNLTGAINAVIEKAGLRIVAQKRIQMTKAQAEAFYAVHSARPFFNDLVSFMTSGPVVVQVLEGEDAVAKYREVMGATNPANAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERPY (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE  GF +   K++ + +  A+  Y +   +PFF   +E++TSGP++  + EGE  V   R I+GATNP
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIIVQVLEGENAVQRHRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERPS (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE  GF +   K++ + +  A+  Y +   +PFF   +E++TSGP++  + EGE  V   R I+GATNP
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIIVQVLEGENAVQRHRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_VIBHB (Nucleoside diphosphate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF ++KPD V+R L+GEI    EK G  +   K++ +    A   Y +   KPFF +  E++TSGP++  + EGE  +   R ++G TNP ++A
Sbjct:    3 LERTFSIVKPDAVERNLIGEIYHRIEKAGLRIVAAKMVHLTEEQASGFYAEHEGKPFFPALKEFMTSGPIMVQVLEGEDAIARYRELMGKTNPEEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_VIBCM (Nucleoside diphosphate kinase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD V+R L+GEI    EK G  +   K++ +    A   Y +   KPFF    E++TSGP++  + EGE  +   R ++G TNP ++A
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_VIBCH (Nucleoside diphosphate kinase OS=Vibrio cholerae GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD V+R L+GEI    EK G  +   K++ +    A   Y +   KPFF    E++TSGP++  + EGE  +   R ++G TNP ++A
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_VIBC3 (Nucleoside diphosphate kinase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD V+R L+GEI    EK G  +   K++ +    A   Y +   KPFF    E++TSGP++  + EGE  +   R ++G TNP ++A
Sbjct:    3 LERTFSIIKPDAVKRNLIGEIYHRIEKAGLQIIAAKMVHLSEEQASGFYAEHEGKPFFEPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAA 99          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_GEOBB2.459e-1436.46Nucleoside diphosphate kinase OS=Geobacter bemidji... [more]
NDK_FLAJ12.459e-1441.05Nucleoside diphosphate kinase OS=Flavobacterium jo... [more]
NDK_CAMC12.459e-1438.14Nucleoside diphosphate kinase OS=Campylobacter con... [more]
NDK_AZOC52.459e-1440.21Nucleoside diphosphate kinase OS=Azorhizobium caul... [more]
NDK_YERPY3.211e-1437.63Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_YERPS3.211e-1437.63Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_VIBHB3.211e-1437.11Nucleoside diphosphate kinase OS=Vibrio harveyi (s... [more]
NDK_VIBCM3.211e-1438.14Nucleoside diphosphate kinase OS=Vibrio cholerae s... [more]
NDK_VIBCH3.211e-1438.14Nucleoside diphosphate kinase OS=Vibrio cholerae G... [more]
NDK_VIBC33.211e-1438.14Nucleoside diphosphate kinase OS=Vibrio cholerae s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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