CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SERP5 (Nucleoside diphosphate kinase OS=Serratia proteamaculans (strain 568) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE+ GF +   K++ + R  A+  Y +   +PFF   +E++TSGP+V  + E E  V   R I+GATNP
Sbjct:    3 VERTFSIIKPNAVANNDIGAIYARFERAGFKIIASKMLRLTREQAEGFYAEHKGRPFFDGLVEFMTSGPIVVQVLEAENAVQRNRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRASO (Nucleoside diphosphate kinase OS=Bradyrhizobium sp. (strain ORS278) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD  +R L G I    EK G  +   K + + R  A+  Y    ++PFFG  ++++ SGPVV  + EGEG +   R ++GAT+P+++A
Sbjct:    3 IERTFSIIKPDATERNLTGAINALIEKAGLRIVAQKRIRMTRDQAETFYAVHKARPFFGELVDFMISGPVVVQVLEGEGAILKYRDVMGATDPSKAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BRASB (Nucleoside diphosphate kinase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF +IKPD  +R L G I    EK G  +   K + + R  A+  Y    ++PFFG  ++++ SGPVV  + EGEG +   R ++GAT+P+++A
Sbjct:    3 IERTFSIIKPDATERNLTGAINALIEKAGLRIVAQKRIRMTREQAETFYAVHKARPFFGELVDFMISGPVVVQVLEGEGAILKYRDVMGATDPSKAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ALHEH (Nucleoside diphosphate kinase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+T  +IKPD V + ++GEI   FEK G  +   +++ + R  A+  Y     +PFF   + ++ SGPV+  + EGE  +   R I+GATNPA++A
Sbjct:    3 VERTLSIIKPDAVAKNIIGEIYNRFEKAGLKIVAARMVHLSREQAEGFYAVHKERPFFNDLVGFMISGPVMVQVLEGENAIVKNREIMGATNPAEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERPP (Nucleoside diphosphate kinase OS=Yersinia pestis (strain Pestoides F) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE+ GF +   K++ + +  A+  Y +   +PFF   +E++TSGP++  + EGE  V   R I+GATNP
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERPN (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE+ GF +   K++ + +  A+  Y +   +PFF   +E++TSGP++  + EGE  V   R I+GATNP
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERPG (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE+ GF +   K++ + +  A+  Y +   +PFF   +E++TSGP++  + EGE  V   R I+GATNP
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERPE (Nucleoside diphosphate kinase OS=Yersinia pestis GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE+ GF +   K++ + +  A+  Y +   +PFF   +E++TSGP++  + EGE  V   R I+GATNP
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERPA (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE+ GF +   K++ + +  A+  Y +   +PFF   +E++TSGP++  + EGE  V   R I+GATNP
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERP3 (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V    +G I   FE  GF++   K++ + +  A+  Y +   +PFF   +E++TSGP++  + EGE  V   R I+GATNP
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFNIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNP 95          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SERP53.211e-1438.71Nucleoside diphosphate kinase OS=Serratia proteama... [more]
NDK_BRASO3.211e-1438.14Nucleoside diphosphate kinase OS=Bradyrhizobium sp... [more]
NDK_BRASB3.211e-1438.14Nucleoside diphosphate kinase OS=Bradyrhizobium sp... [more]
NDK_ALHEH3.211e-1437.11Nucleoside diphosphate kinase OS=Alkalilimnicola e... [more]
NDK_YERPP4.194e-1437.63Nucleoside diphosphate kinase OS=Yersinia pestis (... [more]
NDK_YERPN4.194e-1437.63Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPG4.194e-1437.63Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPE4.194e-1437.63Nucleoside diphosphate kinase OS=Yersinia pestis G... [more]
NDK_YERPA4.194e-1437.63Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERP34.194e-1437.63Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
back to top