CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:79..424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_YERE8 (Nucleoside diphosphate kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            +E+TF +IKP+ V +  +G I   FE  GF +   K++ + +  A+  Y +   +PFF   +E++TSGPV+  + EGE  V   R I+GATNP
Sbjct:    3 VERTFSIIKPNAVAKNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPVMIQVLEGENAVQRHRDIMGATNP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SULNB (Nucleoside diphosphate kinase OS=Sulfurovum sp. (strain NBC37-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQT  +IKPD V + ++G+I+  FE  G  +   K   + R  A+  Y   + +PFF   ++++ SGPVV  + EGE  +   R ++GATNPA++
Sbjct:    1 MEQTLSIIKPDAVAKNVIGQILARFEAAGLRIAATKKTRLSRVDAEAFYAIHAERPFFKDLVDFMISGPVVVTVLEGENAMAKNRELMGATNPAEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SINMW (Nucleoside diphosphate kinase OS=Sinorhizobium medicae (strain WSM419) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF MIKPD  +R L G I    E  G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +A
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RICTY (Nucleoside diphosphate kinase OS=Rickettsia typhi GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ++ TF MIKPD ++R  +G++    E  G  +   K+  + +  A+  Y++  ++PFF S +EYITSG VV  + +GE  +   R I+GATNPA++
Sbjct:    3 IQYTFSMIKPDVIKRNKIGQVNTYLENAGLKIVAQKMKFLTKYEAECFYDEHRARPFFNSLVEYITSGAVVLQVLKGEDAITLNRIIMGATNPAEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RHIME (Nucleoside diphosphate kinase OS=Rhizobium meliloti GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +E+TF MIKPD  +R L G I    E  G  +   K + + R  A+  Y     +PFFG  +E+++SGP V  + EGE  +   R ++GATNPA +A
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKERPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RHILW (Nucleoside diphosphate kinase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G I    E  G  +   K + + R  A+  Y     +PFFG  +E +TSGP V  + EGEG +   R I+GATNPA +
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_RHIE6 (Nucleoside diphosphate kinase OS=Rhizobium etli (strain CIAT 652) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF MIKPD  +R L G I    E  G  +   K + + R  A+  Y     +PFFG  +E +TSGP V  + EGEG +   R I+GATNPA +
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_COXBU (Nucleoside diphosphate kinase OS=Coxiella burnetii GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+T  +IKPD V + ++G+I   FEK G  +   K+  + +P A+K Y     +PF+   ++++T GPV+  + EGE  +   R I+GATNP ++
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_COXBR (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+T  +IKPD V + ++G+I   FEK G  +   K+  + +P A+K Y     +PF+   ++++T GPV+  + EGE  +   R I+GATNP ++
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_COXBN (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+T  +IKPD V + ++G+I   FEK G  +   K+  + +P A+K Y     +PF+   ++++T GPV+  + EGE  +   R I+GATNP ++
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEA 98          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_YERE84.194e-1438.71Nucleoside diphosphate kinase OS=Yersinia enteroco... [more]
NDK_SULNB4.194e-1437.50Nucleoside diphosphate kinase OS=Sulfurovum sp. (s... [more]
NDK_SINMW4.194e-1439.18Nucleoside diphosphate kinase OS=Sinorhizobium med... [more]
NDK_RICTY4.194e-1437.50Nucleoside diphosphate kinase OS=Rickettsia typhi ... [more]
NDK_RHIME4.194e-1439.18Nucleoside diphosphate kinase OS=Rhizobium melilot... [more]
NDK_RHILW4.194e-1441.67Nucleoside diphosphate kinase OS=Rhizobium legumin... [more]
NDK_RHIE64.194e-1441.67Nucleoside diphosphate kinase OS=Rhizobium etli (s... [more]
NDK_COXBU4.194e-1435.42Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXBR4.194e-1435.42Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXBN4.194e-1435.42Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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