CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA_MOUSE (Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEII  FE+KGF L GLK +        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.390e-25
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEII  FE+KGF L GLK +        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.815e-25
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEI+  FE+KGF L GLK +T  R  A++HY     +PFF   +++ITSGPVVAM+ EG+GV+ + R +IGAT P ++
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.815e-25
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEI+  FE+KGF L GLK +T  R  A++HY     +PFF   +++ITSGPVVAM+ EG+GV+ + R +IGAT P ++
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.815e-25
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGL+GEI+  FE+KGF L GLK +T  R  A++HY     +PFF   +++ITSGPVVAM+ EG+GV+ + R +IGAT P ++
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.815e-25
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF+M+KPDGVQR L+GEI+  FE KG+ L G KLM V    A+ HY +   +PFFG  +++ITSGPV AM+ EGE V+ T R ++G TNP ++
Sbjct:    1 MEKTFLMVKPDGVQRELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGKTNPLEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACLD (Nucleoside diphosphate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.371e-25
Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF+M+KPDGVQR L+GEI++ FE+KG  L G KLM V    A +HY++ + KPFFG  +++ITSGPV AM+ EGE  +   R +IG TNP ++
Sbjct:    1 MEKTFVMVKPDGVQRQLIGEILLRFERKGLQLIGAKLMKVSEETAGEHYKEHNGKPFFGELVDFITSGPVFAMVWEGEDAIAVARQLIGKTNPKEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.096e-25
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TF+ IKPDGVQRGLVGEI+  FE+KGF L GLK +T  R  A++HY     +PFF   + +ITSGPVVAM+ EG+GV+ + R +IGAT P +S
Sbjct:    3 ERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLVGFITSGPVVAMVWEGDGVIASARKLIGATKPLES 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.096e-25
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TFI IKPDGVQRGLVG II  FE+KGF L GLK +   R  A++HY     +PFF   +E+ITSGP+VA++ EGEGVV   R +IGATNP
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNP 93          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.096e-25
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TFI IKPDGVQRGLVG II  FE+KGF L GLK +   R  A++HY     +PFF   +E+ITSGP+VA++ EGEGVV   R +IGATNP
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNP 93          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA_MOUSE1.064e-2558.95Nucleoside diphosphate kinase A OS=Mus musculus GN... [more]
NDKA_RAT1.390e-2558.95Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDK_SYNSC1.815e-2556.84Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPX1.815e-2556.84Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPW1.815e-2555.79Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_OCEIH1.815e-2553.13Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK_BACLD2.371e-2553.13Nucleoside diphosphate kinase OS=Bacillus lichenif... [more]
NDK_SYNS93.096e-2556.84Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNP63.096e-2560.22Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE73.096e-2560.22Nucleoside diphosphate kinase OS=Synechococcus elo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
back to top