CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_THET8 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TF+MIKPDGV+RGLVGEI+  FE+KGF +  LKLM + +  A++HY +   KPFF   + +ITSGPVVAM+ EG GVV   R ++GAT+P
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHP 93          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_THET2 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TF+MIKPDGV+RGLVGEI+  FE+KGF +  LKLM + +  A++HY +   KPFF   + +ITSGPVVAM+ EG GVV   R ++GAT+P
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMRISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHP 93          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TF+ IKPDGVQRGLVGEI+  FE+KGF L GLK +T  R  A +HY     +PFF   +++ITSGPV+AM+ EG+GV+ + R +IGAT P
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKP 95          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   45 LKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +  +E+TFI IKPDGVQRGLVGEII  FE+KGF L  +K +        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYTDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRLMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.281e-25
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF+ IKPDGVQRGL+ EI+  FE KGF L GLK +T  +  A+KHY     +PFF   +++ITSGPVVAM+ EGEGV+ + R +IGAT P ++
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_RAT (Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.281e-25
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   45 LKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +  +E+TFI IKPDGVQRGLVGEII  FE+KGF L  +K +        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_MOUSE (Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.281e-25
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   45 LKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +  +E+TFI IKPDGVQRGLVGEII  FE+KGF L  +K +        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_HUMAN (Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.281e-25
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   45 LKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +  +E+TFI IKPDGVQRGLVGEII  FE+KGF L  +K +        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA1_BOVIN (Nucleoside diphosphate kinase A 1 OS=Bos taurus GN=NME1-1 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 5.281e-25
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGL+GEII  FE+KGF L  +K M        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME++F+M+KPDGVQRGL+GE+I   E++G  L   KLM V R  A++HY  L  KPFF S IE+ITSGPV+AM+ EG   ++  R  +GATNPA +
Sbjct:    1 MERSFVMVKPDGVQRGLIGEVISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPVMAMVWEGPNAISIIRKTMGATNPANA 96          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_THET84.044e-2556.99Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_THET24.044e-2556.99Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_PROMM4.044e-2556.99Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKB_PONAB4.044e-2554.55Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDK_PROM15.281e-2554.17Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKB_RAT5.281e-2554.55Nucleoside diphosphate kinase B OS=Rattus norvegic... [more]
NDKB_MOUSE5.281e-2554.55Nucleoside diphosphate kinase B OS=Mus musculus GN... [more]
NDKB_HUMAN5.281e-2554.55Nucleoside diphosphate kinase B OS=Homo sapiens GN... [more]
NDKA1_BOVIN5.281e-2556.84Nucleoside diphosphate kinase A 1 OS=Bos taurus GN... [more]
NDK_SYMTH6.898e-2554.17Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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