CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF+ IKPDGVQRGL+ EI+  FE KGF L GLK +T  +  A+KHY     +PFF   +++ITSGPV+AM+ EGEGV+ + R +IGAT P ++
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 54/96 (56.25%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TFIM+KPD VQRGLVG+II  FE KG  L G+KLM+VD+  A++HY +   K FF   ++YI S PVVAM+ EG+ VV   R ++GATNPA +
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 54/96 (56.25%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TFIM+KPD VQRGLVG+II  FE KG  L G+KLM+VD+  A++HY +   K FF   ++YI S PVVAM+ EG+ VV   R ++GATNPA +
Sbjct:    1 MEKTFIMLKPDAVQRGLVGQIIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STAHJ (Nucleoside diphosphate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF+MIKPD +QR LVGEII   E+KG  L G KLMTV +  A++HY + + KPF+G  I +ITS PV AM+ EGE  V+  R IIG TNP+++
Sbjct:    1 MERTFLMIKPDAIQRNLVGEIISRIERKGLKLVGAKLMTVPQALAEEHYSEHTDKPFYGKLISFITSAPVFAMVVEGEDAVDVSRHIIGKTNPSEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_COLLI (Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEII  FE+KGF L G+K +        +HY DL  +PF+   ++Y+ SGP+VAM+ EG  VV TGR ++G TNPA S
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGMKFVHASEELLKQHYIDLKDRPFYPGLVKYMNSGPIVAMVWEGLNVVKTGRVMLGETNPADS 100          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKM_DICDI (Nucleoside diphosphate kinase, mitochondrial OS=Dictyostelium discoideum GN=ndkM PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 3
Query:   15 NSQNKLVSLNLKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            N    LV L     E++FI IK    QR L+GEII  FEKKGF L G+K++      A KHYEDL+ KPFF   +++ +SG VVAM+ EG+ VV TGR +IGAT+P+QSA
Sbjct:   59 NKSVPLVGLPGTNQERSFIAIKVSSTQRRLIGEIIARFEKKGFKLVGIKILVPTPEHAAKHYEDLNKKPFFNGLVKFFSSGAVVAMVFEGKDVVRTGRVLIGATDPSQSA 168          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEII  FE+KGF L  +K +        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA2_BOVIN (Nucleoside diphosphate kinase A 2 OS=Bos taurus GN=NME1-2 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.009e-25
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGL+GEII  FE+KGF L  +K M        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_LISIN (Nucleoside diphosphate kinase OS=Listeria innocua GN=ndk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.177e-24
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQT++M+KPDGV+RGL+GEI+   EKKG  L   KLM +DR  A++HY +   KPFF   I +ITSGPV AM+ EG+ V+ T R ++G TNP ++
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVAKIEKKGIKLVAGKLMQIDRTLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKTARRMMGKTNPLEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.177e-24
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI +KPDGVQRGLVGEII  FE+KGF L  LK +        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PROMT6.898e-2553.13Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_DESHY6.898e-2556.25Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_DESHD6.898e-2556.25Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_STAHJ9.009e-2555.21Nucleoside diphosphate kinase OS=Staphylococcus ha... [more]
NDK_COLLI9.009e-2555.79Nucleoside diphosphate kinase OS=Columba livia PE=... [more]
NDKM_DICDI9.009e-2551.82Nucleoside diphosphate kinase, mitochondrial OS=Di... [more]
NDKB_BOVIN9.009e-2556.84Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDKA2_BOVIN9.009e-2556.84Nucleoside diphosphate kinase A 2 OS=Bos taurus GN... [more]
NDK_LISIN1.177e-2453.13Nucleoside diphosphate kinase OS=Listeria innocua ... [more]
NDKB_PIG1.177e-2456.84Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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