CF835163

Overview
NameCF835163
Unique NameCF835163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835163_ssr113 microsatellite CF835163_ssr113:113..128. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947 contig Csv1_Contig10947:93..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.473e-47
Identity = 99/140 (70.71%), Postives = 107/140 (76.43%), Query Frame = -3
Query:  242 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD--PDFTWEIVKPL 655
            LTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKS+VA+GLARRC+ Q+SYAIGV EPLSV VD+YGTGKIPD EIL  VK  FDFRPGM+   LDLKRGGN R+  TAAYGHFGRD+    FTWE V PL
Sbjct:  248 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYISRQAAKSVVAAGLARRCLFQISYAIGVAEPLSVHVDTYGTGKIPDSEILAKVKAAFDFRPGMMGKALDLKRGGNKRYQTTAAYGHFGRDEDLDIFTWEKVVPL 387          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK2_PEA (S-adenosylmethionine synthetase 2 OS=Pisum sativum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.368e-46
Identity = 95/123 (77.24%), Postives = 102/123 (82.93%), Query Frame = -3
Query:  287 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHF 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVR+AAKSIVA+GLARRC+VQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL IVKE FDFRPGMISI+LDL RGGNGRF + +    F
Sbjct:  251 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVREAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGKIPDREILNIVKEAFDFRPGMISISLDLLRGGNGRFFEDSCIWTF 373          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.812e-39
Identity = 87/139 (62.59%), Postives = 99/139 (71.22%), Query Frame = -3
Query:  239 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 655
            LTGRKIIID+Y            GKD TKVDRSGAY  R  AKS+VA+GLA RC+VQVSY+IGV +PLSVFVD+YGTGK  D EIL I+  NFD RPG +  +L L R     F KTA+ GHFGR+DPDFTWE VK LK
Sbjct:  248 LTGRKIIIDSYGGWGAHGGGAFSGKDATKVDRSGAYAARWIAKSLVAAGLADRCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDNNFDLRPGCLMRDLQLTR---PIFQKTASGGHFGRNDPDFTWETVKELK 383          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_SYNWW (S-adenosylmethionine synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=metK PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.771e-36
Identity = 76/133 (57.14%), Postives = 99/133 (74.44%), Query Frame = -3
Query:  257 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 655
            LTGRKII+DTY            GKDPTKVDRS +Y++R  AK+IVA+GLA RC +QV+YAIGV  PLS+ V+++GTGKI D +I++++K+NFD RP  I  +LDL+R     + KTAAYGHFGR+D +FTWE
Sbjct:  253 LTGRKIIVDTYGGMARHGGGAFSGKDPTKVDRSASYMLRYVAKNIVAAGLAERCEIQVAYAIGVANPLSINVNTFGTGKISDDKIIELIKKNFDLRPAAIIRDLDLRR---PIYRKTAAYGHFGREDAEFTWE 382          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_DECAR (S-adenosylmethionine synthetase OS=Dechloromonas aromatica (strain RCB) GN=metK PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.340e-35
Identity = 76/133 (57.14%), Postives = 95/133 (71.43%), Query Frame = -3
Query:  257 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 655
            LTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA+GLA RC+VQVSYAIGV EP S+ V++YGTGK+ ++ +  +V+++FD RP  I   LDL R     + KTAAYGHFGRD+P+FTWE
Sbjct:  244 LTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYATRYVAKNIVAAGLASRCLVQVSYAIGVAEPTSIMVETYGTGKVSNETLTALVRKHFDLRPKGIVNMLDLLR---PIYQKTAAYGHFGRDEPEFTWE 373          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_SYMTH (S-adenosylmethionine synthetase OS=Symbiobacterium thermophilum GN=metK PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.362e-35
Identity = 75/133 (56.39%), Postives = 94/133 (70.68%), Query Frame = -3
Query:  257 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 655
            LTGRKII+DTY            GKDPTKVDRSGAY  R  AK+IVA+GLAR+C VQV+YAIGV  P+S+ V ++GTGK+PD+ + ++V+E FD RPG I  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  255 LTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSGAYAARWVAKNIVAAGLARKCEVQVAYAIGVAHPVSILVTTFGTGKLPDERLAQLVRETFDLRPGAIIRDLDLRR---PIYRQVAAYGHFGRPDLDLPWE 384          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.362e-35
Identity = 77/133 (57.89%), Postives = 98/133 (73.68%), Query Frame = -3
Query:  257 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 655
            LTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA+GLAR+C +QVSYAIGV EP S+ VD++GT KIP+++I+++VK++FD RP  I   LDL R   G   KTAAYGHFGR++P+F+WE
Sbjct:  246 LTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLARQCQIQVSYAIGVAEPTSIAVDTFGTNKIPNEKIVELVKKHFDLRPKGIIQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 375          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_THIDA (S-adenosylmethionine synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metK PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = -3
Query:  254 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEI 655
            LTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA+GLA +C+VQVSYAIGV +P S+ VD++GTGKIP+ +I+++++ +FD RP  I   LDL R     + +TA+YGHFGRD+P+FTWE+
Sbjct:  245 LTGRKIIVDTYGGASPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCMVQVSYAIGVAKPTSLMVDTFGTGKIPEAKIVELIQAHFDLRPKGIVNMLDLLR---PIYTRTASYGHFGRDEPEFTWEV 375          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_COXBU (S-adenosylmethionine synthetase OS=Coxiella burnetii GN=metK PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 75/133 (56.39%), Postives = 93/133 (69.92%), Query Frame = -3
Query:  257 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 655
            LTGRKII+DTY            GKDP+KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI +  I +++KE+FD RPG I   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  243 LTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_COXBR (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=metK PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 75/133 (56.39%), Postives = 93/133 (69.92%), Query Frame = -3
Query:  257 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 655
            LTGRKII+DTY            GKDP+KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI +  I +++KE+FD RPG I   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  243 LTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
The following BLAST results are available for this feature:
BLAST of CF835163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_OSTLU8.473e-4770.71S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]
METK2_PEA9.368e-4677.24S-adenosylmethionine synthetase 2 OS=Pisum sativum... [more]
METK_DICDI3.812e-3962.59S-adenosylmethionine synthetase OS=Dictyostelium d... [more]
METK_SYNWW1.771e-3657.14S-adenosylmethionine synthetase OS=Syntrophomonas ... [more]
METK_DECAR3.340e-3557.14S-adenosylmethionine synthetase OS=Dechloromonas a... [more]
METK_SYMTH4.362e-3556.39S-adenosylmethionine synthetase OS=Symbiobacterium... [more]
METK_CHRVO4.362e-3557.89S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_THIDA9.717e-3555.22S-adenosylmethionine synthetase OS=Thiobacillus de... [more]
METK_COXBU9.717e-3556.39S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXBR9.717e-3556.39S-adenosylmethionine synthetase OS=Coxiella burnet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835163 ID=CF835163; Name=CF835163; organism=Citrus sinensis; type=EST; length=657bp
TTGGTTTACCCTTAAGAGAATTTCAGAACAATTCATATTCGCCTCTCCCC
CCATTATGCCTTGGATTGAGAATCCATTAAACATATTTATTAAAAAAAAA
GGGGAAAAGAAGAAGAAAGAAAGAAAGAAAACATTCATGTAACTGAAACA
GAAGTAAAAAAGAAAAGTAGACATATATAAGCACCAATGAGAGGCCAGCA
GCTCATCCTTGATTAGTTTAAGCTTGAAGTTTCTCCCACTTGAGTGGCTT
AACAATCTCCCAAGTGAAATCAGGATCATCTCTGCCAAAGTGCCCATAAG
CGGCAGTCTTCAAGAACCTGCCGTTGCCACCCCTCTTGAGATCAAGATTA
ATAGAAATCATCCCAGGCCTAAAATCAAAATTCTCCTTCACAATCTTCAA
AATTTCCTTGTCAGGGATCTTCCCAGTCCCATAACTATCAACAAAAACTG
ACAAAGGCTCGGGCACACCAATAGCGTAAGAAACCTGAACAATGCATCTC
CTGGCAAGCCCGCTTGCCACAATACTCTTAGCAGCTTGCCTTACAATGTA
AGCACCGCTTCTATCAACCTTGGTAGGATCTTTCCCTGAGAAAGCCCCAC
CACCGTGTGCCCCCCAGCCACCATAAGTATCAATAATAATCTTCCGGCCG
GTGAGCC
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