CF835164

Overview
NameCF835164
Unique NameCF835164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.610e-34
Identity = 71/116 (61.21%), Postives = 89/116 (76.72%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            FLFTSESV+EGHPDK+CDQ+SDAVLDA LAQDP +KVACET TKT M M+ GEIT+KA VDY+ +VR+  + IG+  +  G D   C VLV +EQQSP+IA GV  H+ K  +++G
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGV--HVDKDSDDVG 119          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.610e-34
Identity = 71/116 (61.21%), Postives = 89/116 (76.72%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            FLFTSESV+EGHPDK+CDQ+SDAVLDA LAQDP +KVACET TKT M M+ GEIT+KA VDY+ +VR+  + IG+  +  G D   C VLV +EQQSP+IA GV  H+ K  +++G
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGV--HVDKDSDDVG 119          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_LACPL (S-adenosylmethionine synthetase OS=Lactobacillus plantarum GN=metK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.639e-33
Identity = 67/113 (59.29%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDP ++VA ET   T + +VFGE++TKA VD +K+VRDT +SIG+     G D D+C VLV++++QSPDIAQGV   L  R
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDAMLAQDPQARVAVETSVTTGLVLVFGEVSTKAYVDIQKVVRDTIKSIGYVDGQYGFDGDNCAVLVSLDEQSPDIAQGVDDSLETR 115          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.639e-33
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            FLFTSESV+EGHPDK+CDQ+SDAVLDA LAQDP +KVACET TKT M M+ GEIT+KA VDY+ +VR+  + IG+  +  G D   C VLV +EQQSP+IA GVH
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVH 110          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK1_HUMAN (S-adenosylmethionine synthetase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.639e-33
Identity = 70/116 (60.34%), Postives = 88/116 (75.86%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            F+FTSESV EGHPDK+CDQ+SDAVLDA L QDP++KVACET  KT M ++ GEIT+ A VDY+++VRDT + IG+  +  G D   C VLV +EQQSPDIAQ V  HL +  E++G
Sbjct:   18 FMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVG 131          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK1_RAT (S-adenosylmethionine synthetase isoform type-1 OS=Rattus norvegicus GN=Mat1a PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.141e-33
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            F+FTSESV EGHPDK+CDQ+SDAVLDA L QDP++KVACET  KT M ++ GEIT+ A +DY+++VRDT + IG+  +  G D   C VLV +EQQSPDIAQ V  HL +  E++G
Sbjct:   19 FMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVG 132          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.141e-33
Identity = 70/116 (60.34%), Postives = 88/116 (75.86%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            F+FTSESV EGHPDK+CDQ+SDAVLDA L QDP++KVACET  KT M ++ GEIT+ A VDY+++VRDT + IG+  +  G D   C VLV +EQQSPDIAQ V  HL +  E++G
Sbjct:   19 FMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSVAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVG 132          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_PROM1 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL1A) GN=metK PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.652e-33
Identity = 70/123 (56.91%), Postives = 92/123 (74.80%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSA-DVGLDADHCKVLVNIEQQSPDIAQGVH---GHLTKRPEEIG 546
            M  ++FTSESV EGHPDK+CDQVSDAVLDACL++DP S+VACE    T + ++ GEIT+KA VD+ K+VR+  +SIG+ SA D G DA+ C VLV ++QQS DIAQGV+    H T   +++G
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKSIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVG 123          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.229e-33
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            F+FTSESV EGHPDK+CDQ+SDAVLDA L QDP++KVACET  KT M ++ GEIT+ A VDY+++VR+T + IG+  +  G D   C VLV +EQQSPDIAQ V  HL +  E++G
Sbjct:   19 FMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRETIQHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVG 132          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.136e-33
Identity = 69/123 (56.10%), Postives = 92/123 (74.80%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSA-DVGLDADHCKVLVNIEQQSPDIAQGVH---GHLTKRPEEIG 546
            M  ++FTSESV EGHPDK+CDQVSDAVLDACL++DP S+VACE    T + ++ GEIT+KA VD+ K+VR+  ++IG+ SA D G DA+ C VLV ++QQS DIAQGV+    H T   +++G
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKNIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVG 123          
The following BLAST results are available for this feature:
BLAST of CF835164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK4_CAEEL9.610e-3461.21Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK3_CAEEL9.610e-3461.21Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK_LACPL1.639e-3359.29S-adenosylmethionine synthetase OS=Lactobacillus p... [more]
METK5_CAEEL1.639e-3365.71Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]
METK1_HUMAN1.639e-3360.34S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_RAT2.141e-3359.48S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_MOUSE2.141e-3360.34S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_PROM13.652e-3356.91S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK1_BOVIN6.229e-3359.48S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_PROMT8.136e-3356.10S-adenosylmethionine synthetase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835164 ID=CF835164; Name=CF835164; organism=Citrus sinensis; type=EST; length=548bp
GAAACTACAAATCCTTGCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAG
CGTATGCATATCGGCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGT
ATATCACCACCTTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAA
GCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATT
TCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTG
ACCAAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGAC
AGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACATGGACATGGTTTT
TGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTG
ATACATGCAGATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
GATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAAAGCCCTGACATTGC
TCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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