CF835164

Overview
NameCF835164
Unique NameCF835164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_PROMH (S-adenosylmethionine synthetase OS=Proteus mirabilis (strain HI4320) GN=metK PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.136e-33
Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            M T LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT M MV GEITTKA VD E+I R T R IG+TS+D+G DA+ C V+  I +QSPDI QGV
Sbjct:    1 MTTHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTKAWVDIEEITRKTVREIGYTSSDMGFDANSCAVISAIGKQSPDINQGV 107          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_TREPS (S-adenosylmethionine synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=metK PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.063e-32
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHG 516
            METF FTSESV+EGHPDKLCDQ+SDAVLDACL+QDP S VACET   T++ ++ GEI+T+A+++  +I RD    IG+ SADVGLDA    VL     QSPDIAQGVHG
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHG 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_TREPA (S-adenosylmethionine synthetase OS=Treponema pallidum GN=metK PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.063e-32
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHG 516
            METF FTSESV+EGHPDKLCDQ+SDAVLDACL+QDP S VACET   T++ ++ GEI+T+A+++  +I RD    IG+ SADVGLDA    VL     QSPDIAQGVHG
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHG 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_GEOUR (S-adenosylmethionine synthetase OS=Geobacter uraniireducens (strain Rf4) GN=metK PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.812e-32
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            M+ F+FTSESV+EGHPDK+ DQVSDA+LDA L QDP S+VACET   T M +V GEITT A VDY KIVR+T + IG+  + +G D + C VL +I++QSPDIAQGV
Sbjct:    3 MKDFIFTSESVSEGHPDKVADQVSDAILDAILTQDPKSRVACETLVTTGMTVVAGEITTNAIVDYPKIVRETIKEIGYNDSAMGFDWETCAVLTSIDKQSPDIAQGV 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.812e-32
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            LFTSESV EGHPDK+CDQ+SDA+LDA L +DP+++VACET   T + +V GEITT   VD  KIVRDT R IG+T A  G DAD C VL +I++QSPDIA GV   L  R
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDKALEAR 116          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.812e-32
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            M+ F+FTSESV+EGHPDK+ DQVSDA+LDA L QDP S+VACET   T M ++ GEITT A +DY KIVR+T R IG+  + +G D + C VL +I++QSPDIAQGV
Sbjct:    3 MKDFIFTSESVSEGHPDKVADQVSDAILDAILTQDPKSRVACETMVTTGMAVIAGEITTNAIIDYPKIVRETIREIGYNDSAMGFDWETCAVLTSIDKQSPDIAQGV 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_LACRJ (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain JCM 1112) GN=metK PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.092e-32
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 540
            E  LFTSESV+EGHPDK+ DQ+SDA+LD  L +DPDS+VA ET   T + +VFGE++TKA V+ ++IVRDT R IG+T    G DAD+C V+  I++QSPDIAQGV   L  R  E
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGE 118          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_LACRD (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=metK PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.092e-32
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 540
            E  LFTSESV+EGHPDK+ DQ+SDA+LD  L +DPDS+VA ET   T + +VFGE++TKA V+ ++IVRDT R IG+T    G DAD+C V+  I++QSPDIAQGV   L  R  E
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGE 118          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_SYNS9 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9902) GN=metK PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.038e-32
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADV-GLDADHCKVLVNIEQQSPDIAQGVH 513
            M  ++FTSESV EGHPDK+CDQVSDAVLDA LAQDP S+VACET   T + M+ GE+T+KA VD+  +VRD  + IG++ A   G DA+ C VLV ++QQSPDIAQGV+
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDPASRVACETVVNTGLCMITGEVTSKAKVDFIHLVRDVIKEIGYSGARAGGFDANSCAVLVALDQQSPDIAQGVN 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_PSEA6 (S-adenosylmethionine synthetase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=metK PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.038e-32
Identity = 72/119 (60.50%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            M   LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET  KT M MV GE+TT A VD E++ R+T R IG+T +D+G DAD C VL  I +QSPDI QGV      RPE+ G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILKQDPKARVACETYVKTGMVMVGGEVTTNAWVDIEELTRNTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RTRPEDQG 116          
The following BLAST results are available for this feature:
BLAST of CF835164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PROMH8.136e-3366.36S-adenosylmethionine synthetase OS=Proteus mirabil... [more]
METK_TREPS1.063e-3264.22S-adenosylmethionine synthetase OS=Treponema palli... [more]
METK_TREPA1.063e-3264.22S-adenosylmethionine synthetase OS=Treponema palli... [more]
METK_GEOUR1.812e-3262.62S-adenosylmethionine synthetase OS=Geobacter urani... [more]
METK_GEOSW1.812e-3261.82S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_GEOSM1.812e-3261.68S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]
METK_LACRJ3.092e-3257.76S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_LACRD3.092e-3257.76S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_SYNS94.038e-3261.47S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_PSEA64.038e-3260.50S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835164 ID=CF835164; Name=CF835164; organism=Citrus sinensis; type=EST; length=548bp
GAAACTACAAATCCTTGCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAG
CGTATGCATATCGGCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGT
ATATCACCACCTTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAA
GCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATT
TCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTG
ACCAAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGAC
AGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACATGGACATGGTTTT
TGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTG
ATACATGCAGATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
GATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAAAGCCCTGACATTGC
TCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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