CF835164

Overview
NameCF835164
Unique NameCF835164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_VARPS (S-adenosylmethionine synthetase OS=Variovorax paradoxus (strain S110) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            FLFTSESV+EGHPDK+ DQ+SDA+LDA   QDP S+VA ET T T + ++ GEITT A+VDY ++ RDT + IG+ + D G+D   C V+V  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFEQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTDYGIDYKGCAVMVCYDKQSNDIAQGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_RALME (S-adenosylmethionine synthetase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            FLFTSESV+EGHPDK+ DQ+SDAVLDA LAQD  ++VA ET   T + ++ GEITT ANVDY ++ R+T + IG+ + + G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAVLDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQVARETIKRIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_NITOC (S-adenosylmethionine synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  205 FTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHL 522
            FTSESV+EGHPDK+ DQ+SD +LDA LAQD  ++VACET  KT M +V GEITT+A++DYE+I+R+T   IG+  +++G D   C V+  I +QS DIAQGV   L
Sbjct:    7 FTSESVSEGHPDKVADQISDVILDAILAQDRRARVACETLVKTGMVLVAGEITTQAHIDYEQIIRETITEIGYNHSEIGFDGATCAVVNAIGKQSSDIAQGVDREL 112          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_DIAST (S-adenosylmethionine synthetase OS=Diaphorobacter sp. (strain TPSY) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            FLFTSESV+EGHPDK+ DQ+SDA+LDA   QDP S+VA ET T T + ++ GEITT A+VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_CHRSD (S-adenosylmethionine synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            E  LFTSESV+EGHPDK+ DQ+SDAVLDA +A+D  ++VACET  KT + +V GEITT A VD E +VR     IG+TS+DVG D + C VL  I +QS DIAQGV      +PE+ G
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIARDKQARVACETMVKTGVAIVAGEITTSAWVDLEDLVRRVINDIGYTSSDVGFDGNTCGVLNLIGKQSVDIAQGVD---RSKPEDQG 117          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_BIFA0 (S-adenosylmethionine synthetase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            E  L ++ESV EGHPDK+CDQ+SDA+LD  L QDP S VA ET        VFGE+T+K   D + IVRDT R IG+TS+ +GLDAD C VLV++ +QSP+I QGV
Sbjct:    3 EVKLISAESVTEGHPDKICDQISDAILDDMLRQDPHSHVAVETSATKGQFWVFGEVTSKGYSDIQSIVRDTVRRIGYTSSVIGLDADSCGVLVSLSEQSPEINQGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_BDEBA (S-adenosylmethionine synthetase OS=Bdellovibrio bacteriovorus GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            M+ +LFTSESV+EGHPDK+ DQ+SD +LDA LAQDP  +VACET   T + +V GEITT A V++ ++ RD  + IG+  +D G D   C V++ + QQSPDIA GV
Sbjct:    1 MKNYLFTSESVSEGHPDKMADQISDGILDAILAQDPKGRVACETLLTTGLVVVAGEITTSAKVNFSEVARDVVKRIGYDHSDKGFDYKTCGVMIAVGQQSPDIAVGV 107          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_AMOPS (S-adenosylmethionine synthetase OS=Amoeba proteus symbiotic bacterium GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTK 528
            +FTSESV+EGHPDK+ DQ+SDA+LDA LA+DP ++VACET  KT M +V GEITT A VD E I R+  + IG+ S+D+G D   C VL  I +QS DIAQGV    TK
Sbjct:    5 VFTSESVSEGHPDKIADQISDAILDAILAKDPLARVACETFVKTGMVLVGGEITTSAWVDVETITREVIKDIGYNSSDMGFDWASCSVLSAIGKQSLDIAQGVDNRETK 113          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_ACIAC (S-adenosylmethionine synthetase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=metK PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.708e-28
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            FLFTSESV+EGHPDK+ DQ+SDA+LDA   +DP S+VA ET T T + ++ GEITT A+VDY ++ RDT + IG+ + D G+D   C VLV  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFREDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSNDIAQGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_TRIEI (S-adenosylmethionine synthetase OS=Trichodesmium erythraeum (strain IMS101) GN=metK PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.537e-28
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            +LFTSESV EGHPDK+CDQ+SD ++DA LAQDP S+VA E    T + ++ GEITTKA V+Y ++ R     IG+  A+ G  AD C VLV +++QS DIAQGV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTIIDAILAQDPQSRVAAEVVVNTGLVLITGEITTKAQVNYIELARKKIADIGYVHAENGFSADSCSVLVALDEQSADIAQGV 108          
The following BLAST results are available for this feature:
BLAST of CF835164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_VARPS2.708e-2857.69S-adenosylmethionine synthetase OS=Variovorax para... [more]
METK_RALME2.708e-2858.65S-adenosylmethionine synthetase OS=Ralstonia metal... [more]
METK_NITOC2.708e-2856.60S-adenosylmethionine synthetase OS=Nitrosococcus o... [more]
METK_DIAST2.708e-2857.69S-adenosylmethionine synthetase OS=Diaphorobacter ... [more]
METK_CHRSD2.708e-2856.78S-adenosylmethionine synthetase OS=Chromohalobacte... [more]
METK_BIFA02.708e-2857.55S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_BDEBA2.708e-2854.21S-adenosylmethionine synthetase OS=Bdellovibrio ba... [more]
METK_AMOPS2.708e-2858.72S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_ACIAC2.708e-2857.69S-adenosylmethionine synthetase OS=Acidovorax aven... [more]
METK_TRIEI3.537e-2855.77S-adenosylmethionine synthetase OS=Trichodesmium e... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835164 ID=CF835164; Name=CF835164; organism=Citrus sinensis; type=EST; length=548bp
GAAACTACAAATCCTTGCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAG
CGTATGCATATCGGCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGT
ATATCACCACCTTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAA
GCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATT
TCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTG
ACCAAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGAC
AGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACATGGACATGGTTTT
TGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTG
ATACATGCAGATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
GATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAAAGCCCTGACATTGC
TCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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