CF835164

Overview
NameCF835164
Unique NameCF835164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_BUCAI (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.034e-28
Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            M  +LFTSESV+EGHPDK+ DQ+SDA+LD  L QD  ++VACET  KT M ++ GEITT A VD E+I R T   IG+ ++D G DA+ C VL  I +QSPDI QG++
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGIN 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_BUCA5 (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.034e-28
Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            M  +LFTSESV+EGHPDK+ DQ+SDA+LD  L QD  ++VACET  KT M ++ GEITT A VD E+I R T   IG+ ++D G DA+ C VL  I +QSPDI QG++
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGIN 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_ACIF5 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.034e-28
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            ++ LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDP  +VA ET   T + ++ GEITT A VDY  + R T R IG+ S+D+G D   C V+  +++QSPDIAQGV
Sbjct:    3 KSHLFTSESVSEGHPDKVADQISDAILDAILAQDPRGRVAAETLITTGLIVLAGEITTTAVVDYADVARQTVRRIGYNSSDMGFDWASCAVVQTLDKQSPDIAQGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_ACIF2 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.034e-28
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            ++ LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDP  +VA ET   T + ++ GEITT A VDY  + R T R IG+ S+D+G D   C V+  +++QSPDIAQGV
Sbjct:    3 KSHLFTSESVSEGHPDKVADQISDAILDAILAQDPRGRVAAETLITTGLIVLAGEITTTAVVDYADVARQTVRRIGYNSSDMGFDWASCAVVQTLDKQSPDIAQGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_PELTS (S-adenosylmethionine synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=metK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            LFTSESV EGHPDK+ DQ+SDAVLDA   +DP ++VACET   T + +V GEITT   VD  ++ R+T R IG+T A  G D D C V+ +I++QS DIAQGV   L  R
Sbjct:    5 LFTSESVTEGHPDKIADQISDAVLDAIFEKDPLARVACETLVTTGLVLVAGEITTDCYVDIPRVARETIREIGYTRAKYGFDCDTCAVITSIDEQSSDIAQGVDRALEVR 114          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_METCA (S-adenosylmethionine synthetase OS=Methylococcus capsulatus GN=metK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            +F+FTSESV+EGHPDK+ DQVSDAVLDA LAQDP ++VA ET  KT M ++ GE+TT A VD E++VR     IG+ + ++G D   C VL  I +QSPDIA GV
Sbjct:    4 SFIFTSESVSEGHPDKIADQVSDAVLDAILAQDPKARVAVETLVKTGMVVLAGEVTTSAWVDTEELVRKVVHEIGYDNPEIGFDWQSCAVLTAIGKQSPDIAMGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_THEM4 (S-adenosylmethionine synthetase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.029e-27
Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEI 543
            LFTSESV EGHPDK+ DQ+SDA+LDA L QDP S+VA ET   T + +V GE+TT+A VD + IVR T   IG+T A  G D + C VL +I  QSPDIA GV   L  +  E+
Sbjct:    4 LFTSESVTEGHPDKVADQISDAILDAMLEQDPRSRVAVETLVTTGIAIVSGEVTTRAYVDIQDIVRKTIMEIGYTRAKYGFDGETCAVLSSIHSQSPDIAMGVDKALEAKEGEL 117          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_HAEDU (S-adenosylmethionine synthetase OS=Haemophilus ducreyi GN=metK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.029e-27
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG++ +D+G DA  C VL  I +QSPDI QGV
Sbjct:   10 LFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVIYDIGYSHSDMGFDAHSCAVLNAIGKQSPDINQGV 112          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_RHOFD (S-adenosylmethionine synthetase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            FLFTSESV+EGHPDK+ DQ+SDA+LDA   QDP S+VA ET   T + ++ GEITT A+VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFKQDPKSRVAAETLCNTGLVVLAGEITTNAHVDYIQVARDTLKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_DESRM (S-adenosylmethionine synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 540
            M   LFTSESV EGHPDK+ DQ+SDA+LD+ LA+DP ++VACET   T + +V GEI+ +  VD  K+VR+T   IG+T A  G D D C VL  I++QSPDIA GV   L  +  E
Sbjct:    1 MSRKLFTSESVTEGHPDKVADQISDAILDSILAKDPMARVACETFVTTGLVLVGGEISCQCYVDIPKVVRETILEIGYTRAKYGFDGDTCAVLTAIDEQSPDIAMGVDKALEAKTGE 117          
The following BLAST results are available for this feature:
BLAST of CF835164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BUCAI6.034e-2856.48S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCA56.034e-2856.48S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_ACIF56.034e-2856.60S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_ACIF26.034e-2856.60S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_PELTS7.880e-2855.45S-adenosylmethionine synthetase OS=Pelotomaculum t... [more]
METK_METCA7.880e-2858.10S-adenosylmethionine synthetase OS=Methylococcus c... [more]
METK_THEM41.029e-2755.26S-adenosylmethionine synthetase OS=Thermosipho mel... [more]
METK_HAEDU1.029e-2760.19S-adenosylmethionine synthetase OS=Haemophilus duc... [more]
METK_RHOFD1.344e-2756.73S-adenosylmethionine synthetase OS=Rhodoferax ferr... [more]
METK_DESRM1.344e-2752.99S-adenosylmethionine synthetase OS=Desulfotomaculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835164 ID=CF835164; Name=CF835164; organism=Citrus sinensis; type=EST; length=548bp
GAAACTACAAATCCTTGCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAG
CGTATGCATATCGGCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGT
ATATCACCACCTTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAA
GCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATT
TCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTG
ACCAAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGAC
AGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACATGGACATGGTTTT
TGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTG
ATACATGCAGATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
GATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAAAGCCCTGACATTGC
TCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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