CF835164

Overview
NameCF835164
Unique NameCF835164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_BLOFL (S-adenosylmethionine synthetase OS=Blochmannia floridanus GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27
Identity = 58/108 (53.70%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            M  FLFTSESV+ GHPDK+ DQ+SD++LD+ L QDP ++VACET  KT + ++ GEITT A+V+ EKI R+T + IG+T   +GLDA+ C +L  I QQSP+I   ++
Sbjct:    1 MTRFLFTSESVSAGHPDKIADQISDSILDSILEQDPKARVACETYIKTGIVLIGGEITTTASVNIEKIARNTIQEIGYTHPKMGLDANSCVILSVINQQSPEIQYSIN 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_BIFLI (S-adenosylmethionine synthetase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=metK PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            L ++ESV EGHPDK+CDQ+SDA+LD  L QDP S VA ET   T + +VFGE+T+K   D +  VR+T R+IG+TS++VGLDAD C V+V I +QS +I QGV
Sbjct:    7 LISAESVTEGHPDKVCDQISDAILDDLLVQDPSSHVAVETSAATGVFLVFGEVTSKGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGV 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_THEAB (S-adenosylmethionine synthetase OS=Thermosipho africanus (strain TCF52B) GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.756e-27
Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEI 543
            LFTSESV EGHPDK+ DQ+SDA+LDA L QDP S+VA ET   T + +V GE+TT+A VD + IVR T   IG+T A  G D + C VL +I  QSPDIA GV   L  +  E+
Sbjct:    4 LFTSESVTEGHPDKVADQISDAILDAMLEQDPKSRVAVETLVTTGIAIVSGEVTTRAYVDIQDIVRKTILDIGYTRAKYGFDGETCAVLSSIHSQSPDIALGVDKALEAKEGEL 117          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_STAES (S-adenosylmethionine synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.756e-27
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            LFTSESV EGHPDK+ DQVSDA+LD  L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D+    VL  I++QSPDIAQGV   L  R
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKDIGYTRAKYGYDSQTMAVLTAIDEQSPDIAQGVDKALEYR 116          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_STAEQ (S-adenosylmethionine synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.756e-27
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            LFTSESV EGHPDK+ DQVSDA+LD  L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D+    VL  I++QSPDIAQGV   L  R
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKDIGYTRAKYGYDSQTMAVLTAIDEQSPDIAQGVDKALEYR 116          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.756e-27
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L +D  ++VA ET   T + ++ GEITT ANVDY KI R+T + IG+  +++G D   C V+   ++QSPDIAQGV+
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQISDAILDAILREDKHARVAAETLVNTGLVVLAGEITTTANVDYIKIARETIKRIGYDDSELGFDFRGCAVMACYDKQSPDIAQGVN 108          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_AZOSE (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain EbN1) GN=metK PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.756e-27
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            +LFTSESV+EGHPDK+ DQVSD VLDA LA DP ++VACET   T + ++ GEITT A+ +Y +I ++  R IG+ ++D+G D   C VL  I +QS DIAQGV+
Sbjct:    5 YLFTSESVSEGHPDKVADQVSDGVLDAILATDPQARVACETLVSTGLVVISGEITTTAHPNYREIAQEVIRRIGYDNSDIGFDYKSCAVLAAINRQSADIAQGVN 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_STRSY (S-adenosylmethionine synthetase OS=Streptococcus suis (strain 05ZYH33) GN=metK PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.293e-27
Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 537
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DPD+ VA ET   T    VFGEI+T A VD  ++VRDT   IG+T  + G  A+   V  ++ +QSPDIAQGV+  L  R +
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSPDIAQGVNEALETRQD 117          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_STRS2 (S-adenosylmethionine synthetase OS=Streptococcus suis (strain 98HAH33) GN=metK PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.293e-27
Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 537
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DPD+ VA ET   T    VFGEI+T A VD  ++VRDT   IG+T  + G  A+   V  ++ +QSPDIAQGV+  L  R +
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSPDIAQGVNEALETRQD 117          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_LEIXX (S-adenosylmethionine synthetase OS=Leifsonia xyli subsp. xyli GN=metK PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.293e-27
Identity = 63/112 (56.25%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 537
            LFTSESV EGHPDK+CDQ+SD++LDA LA D  S+VA ET   T +  V GE+TTK  V+   +VRDT   IG+ S+DV  D   C V V+I  QSPDIAQGV   L  R E
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLAVDEHSRVAVETLVTTGLVHVAGEVTTKGYVEIPALVRDTIVEIGYDSSDVSFDGTQCGVSVSIGAQSPDIAQGVDNALETRSE 117          
The following BLAST results are available for this feature:
BLAST of CF835164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BLOFL1.344e-2753.70S-adenosylmethionine synthetase OS=Blochmannia flo... [more]
METK_BIFLI1.344e-2757.28S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_THEAB1.756e-2755.26S-adenosylmethionine synthetase OS=Thermosipho afr... [more]
METK_STAES1.756e-2755.45S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAEQ1.756e-2755.45S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_CHRVO1.756e-2753.70S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_AZOSE1.756e-2755.24S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_STRSY2.293e-2753.91S-adenosylmethionine synthetase OS=Streptococcus s... [more]
METK_STRS22.293e-2753.91S-adenosylmethionine synthetase OS=Streptococcus s... [more]
METK_LEIXX2.293e-2756.25S-adenosylmethionine synthetase OS=Leifsonia xyli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835164 ID=CF835164; Name=CF835164; organism=Citrus sinensis; type=EST; length=548bp
GAAACTACAAATCCTTGCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAG
CGTATGCATATCGGCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGT
ATATCACCACCTTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAA
GCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATT
TCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTG
ACCAAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGAC
AGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACATGGACATGGTTTT
TGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTG
ATACATGCAGATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
GATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAAAGCCCTGACATTGC
TCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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