CF835164

Overview
NameCF835164
Unique NameCF835164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835164_ssr33 microsatellite CF835164_ssr33:33..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12594 contig Csv1_Contig12594:11..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_STRP6 (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M6 GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.994e-27
Identity = 61/113 (53.98%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T    VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_STRP3 (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M3 GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.994e-27
Identity = 61/113 (53.98%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LA+DP++ VA ETC  T    VFGEI+T A +D  ++VRDT   IG+T A+ G  A+   V  ++ +QS DIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESR 115          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_STAHJ (S-adenosylmethionine synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.994e-27
Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            LFTSESV EGHPDK+ DQVSDA+LD  L  DP+++VACET   T M ++ GEI+T   VD  K+VR+T + IG+T A  G D     VL  I++QSPDIAQGV   L  R
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTSTYVDIPKVVRETIKGIGYTRAKYGYDYQTMAVLTAIDEQSPDIAQGVDKALEYR 116          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_RICTY (S-adenosylmethionine synthetase OS=Rickettsia typhi GN=metK PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.994e-27
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            ME F+FTSESV+EGHPDK+ DQ+SDAVLD  L  DP+ +VACET   T + +V GEITT   VD E++VR+    IG+ +   G D   C V+ +I +QSPDIA G+        EEIG
Sbjct:    1 MENFVFTSESVSEGHPDKIADQISDAVLDEILKHDPNGRVACETFVTTGLVLVGGEITTNTYVDIEQVVRNKIHEIGYNNPSYGFDGSCCAVISSIVKQSPDIAMGID---NANEEEIG 116          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_HAES2 (S-adenosylmethionine synthetase OS=Haemophilus somnus (strain 2336) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.994e-27
Identity = 61/107 (57.01%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            M ++LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG+  +D+G D   C VL  I +QS DI QGV
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILRQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDIGFDGHSCAVLNAIGKQSSDINQGV 107          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_HAES1 (S-adenosylmethionine synthetase OS=Haemophilus somnus (strain 129Pt) GN=metK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.994e-27
Identity = 61/107 (57.01%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            M ++LFTSESV+EGHPDK+ DQ+SDAVLD  L QDP ++VACET  KT M +V GEITT A VD E + R     IG+  +D+G D   C VL  I +QS DI QGV
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILRQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDIGFDGHSCAVLNAIGKQSSDINQGV 107          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_THELT (S-adenosylmethionine synthetase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            LFTSESV EGHPDK+ DQ+SDA+LDA + QDPD++VA ET   T + +V GE+TT+A VD + IVR T   IG+T A  G D + C V+ +I  QSPDIA GV+
Sbjct:    4 LFTSESVTEGHPDKVADQISDAILDALIEQDPDARVAVETLVTTGLAVVAGEVTTEAYVDIQDIVRRTILDIGYTRAKYGFDGETCGVVTSIHSQSPDIALGVN 107          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_SYNJA (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain JA-3-3Ab) GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  202 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 540
            +F+SESV EGHPDK+CDQ+SDA++DA L  DP S+VA E    T M ++ GEIT++A+V++ ++VRD    IG+T A  G  A+ C VLV  ++QSPDIAQGV+  L  R  +
Sbjct:    1 MFSSESVTEGHPDKICDQISDAIVDALLTADPLSRVAAEVVVNTGMVILTGEITSQAHVNFTRLVRDKVAEIGYTDAKNGFSAESCAVLVAFDEQSPDIAQGVNLALESRTSQ 113          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_SYNFM (S-adenosylmethionine synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            M  FLFTSESV EGHPDK+ DQ+SD++LDA + +D  ++VACET   T +  V GEITT + VD   I+R T + IG+  + +G D   C V+ +I++QSPDIAQGV+
Sbjct:    3 MSNFLFTSESVTEGHPDKVADQISDSILDAIITEDKTARVACETLVTTGLAFVAGEITTSSWVDIPDIIRSTIKGIGYNDSSMGFDWSTCAVITSIDKQSPDIAQGVN 110          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_STRSV (S-adenosylmethionine synthetase OS=Streptococcus sanguinis (strain SK36) GN=metK PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.911e-27
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA L+QDPD+ VA ET   T    VFGEI+T A VD  ++VRDT   IG+T+ + G  A+   V  ++ +QSPDIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAVLSQDPDAHVAAETAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTNTEYGFSAETVGVHPSLVEQSPDIAQGVNEALEVR 115          
The following BLAST results are available for this feature:
BLAST of CF835164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STRP62.994e-2753.98S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRP32.994e-2753.98S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STAHJ2.994e-2755.45S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_RICTY2.994e-2751.26S-adenosylmethionine synthetase OS=Rickettsia typh... [more]
METK_HAES22.994e-2757.01S-adenosylmethionine synthetase OS=Haemophilus som... [more]
METK_HAES12.994e-2757.01S-adenosylmethionine synthetase OS=Haemophilus som... [more]
METK_THELT3.911e-2756.73S-adenosylmethionine synthetase OS=Thermotoga lett... [more]
METK_SYNJA3.911e-2751.33S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SYNFM3.911e-2751.85S-adenosylmethionine synthetase OS=Syntrophobacter... [more]
METK_STRSV3.911e-2754.87S-adenosylmethionine synthetase OS=Streptococcus s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835164 ID=CF835164; Name=CF835164; organism=Citrus sinensis; type=EST; length=548bp
GAAACTACAAATCCTTGCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAG
CGTATGCATATCGGCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGT
ATATCACCACCTTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAA
GCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATT
TCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTG
ACCAAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGAC
AGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACATGGACATGGTTTT
TGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTG
ATACATGCAGATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
GATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAAAGCCCTGACATTGC
TCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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