CF835187

Overview
NameCF835187
Unique NameCF835187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835187_ssr579 microsatellite CF835187_ssr579:579..590. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_HUMAN (Inositol-3-phosphate synthase 1 OS=Homo sapiens GN=ISYNA1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDL LL EL  R+    + + +  +FHPV ++LS+L KAPLVPPG+PVVNAL +QR+ +ENILRACVGL P+N+M+LE+K
Sbjct:  425 PIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHK 507          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_MOUSE (Inositol-3-phosphate synthase 1 OS=Mus musculus GN=Isyna1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.806e-21
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDLVLL EL  R+    + + +   FH V ++LS+L KAPLVPPG+PVVNAL +QR+ +ENI RACVGL P+N+M+LE+K
Sbjct:  425 PIMLDLVLLTELCQRVSFCTDSDPEPQGFHTVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENIFRACVGLPPQNHMLLEHK 507          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_BOVIN (Inositol-3-phosphate synthase 1 OS=Bos taurus GN=ISYNA1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            PI+LDL LL EL  R+    + +    SFHPV ++L +L KAPL PPG+PVVNAL +QR+ +ENILRACVGL P+N+M+LE+K
Sbjct:  425 PIMLDLALLTELCQRVSFCTDVDPDPQSFHPVLSLLGFLFKAPLAPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHK 507          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_DROME (Inositol-3-phosphate synthase OS=Drosophila melanogaster GN=Inos PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = -3
Query:  283 PIVLDLVLLAELSTRIQLK-AEGEGK-FHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK 531
            P++LDLV+L ELSTRIQL+ AE E   +  F PV ++LSYL KAPLVP G+ VVN+L +QRA +ENILR C+GL P ++M LE +
Sbjct:  429 PLILDLVILGELSTRIQLRNAEKESAPWVPFKPVLSLLSYLCKAPLVPQGSQVVNSLFRQRAAIENILRGCIGLPPISHMTLEQR 513          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_YEAST (Inositol-3-phosphate synthase OS=Saccharomyces cerevisiae GN=INO1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = -3
Query:  289 PIVLDLVLLAELSTRIQLKA-----EGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILE 531
            P+++DL+++ E  TR+  K      E  GKF +F+PV T LSY  KAPL  PG   VN L+KQR  LEN LR  +GL  +N +  E
Sbjct:  444 PLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQNELRFE 529          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_CANAL (Inositol-3-phosphate synthase OS=Candida albicans GN=INO1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = -3
Query:  289 PIVLDLVLLAELSTRIQLKAEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILE 531
            P+++DLV+  E +TR+Q+K  G+  +   +PVA++LSY  KAPL  PG   +N L+KQR  L N+L   VGL  +N +  E
Sbjct:  436 PLIIDLVVATEFATRVQVKGPGKSDYDELYPVASLLSYWLKAPLARPGFKPINGLNKQRQQLVNLLSVLVGLPIDNELRFE 516          
BLAST of CF835187 vs. ExPASy Swiss-Prot
Match: INO1_CANGA (Inositol-3-phosphate synthase OS=Candida glabrata GN=INO1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = -3
Query:  316 PIVLDLVLLAELSTRIQLK-------AEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGL 531
            P+++DL+++ E  +R+  +       AE +G F +F+PV + LSY  KAPL  PG   +N L+KQR  LEN LR  +GL
Sbjct:  447 PLIIDLIVMTEFCSRVTYRNVDGQDGAEAKGDFENFYPVLSFLSYWLKAPLTKPGYQPINGLNKQRTALENFLRLLIGL 525          
The following BLAST results are available for this feature:
BLAST of CF835187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
INO1_HUMAN7.668e-2259.04Inositol-3-phosphate synthase 1 OS=Homo sapiens GN... [more]
INO1_MOUSE3.806e-2157.83Inositol-3-phosphate synthase 1 OS=Mus musculus GN... [more]
INO1_BOVIN4.970e-2157.83Inositol-3-phosphate synthase 1 OS=Bos taurus GN=I... [more]
INO1_DROME1.768e-1858.82Inositol-3-phosphate synthase OS=Drosophila melano... [more]
INO1_YEAST1.311e-1345.35Inositol-3-phosphate synthase OS=Saccharomyces cer... [more]
INO1_CANAL2.236e-1343.21Inositol-3-phosphate synthase OS=Candida albicans ... [more]
INO1_CANGA2.093e-1141.77Inositol-3-phosphate synthase OS=Candida glabrata ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835187 ID=CF835187; Name=CF835187; organism=Citrus sinensis; type=EST; length=680bp
TTTTTTTTTTCCCGCAATACAGTTATTTATGAACTTCCATATATTATCTA
CTTGCAATACAAGAGATTTCATGCTCCGAAATGAGCTACAAAGGCAATGG
GCTACACTCCAGCACCTTCATTAAAAAAATAAAAGAGCAAACATACAGGA
CACACTAATATTAACCACAATTTCATGACACAAGACATTACAATCAGTAA
TTAAATGGACCACCACAGCTTTGATTGGTGACAGAGAAAGGGAAAACCGG
TTCTTCCACTTTTCTCCCCTGCAAGTTCTTCACTTGTATTCCAAAATCAT
GTTGTTCTCAGGAGCCAAGCCAACGCAAGCCCTCAGAATGTTCTCAAGCA
TTGCACGCTGCTTCGACAGCGCATTCACCACTGGTGTGCCTGGAGGGACC
AGAGGAGCCTTGGTGAGGTAGCTGAGAATTGTAGCCACAGGGTGGAAAGA
GTGGAATTTGCCCTCTCCTTCAGCTTTGAGCTGGATCCTGGTGCTGAGTT
CAGCCAGCAGAACCAAATCTAGAACGATTGGAGCAGCCAAAAGGAAGGAA
GAGGAAGCTAAGAAAGAAGAGCCAAAGAAAGAAGAAGAAGCTAAGAAAGA
AGAGCCCAAAAAAGAAGAACCCAAGAAAGAAGAAGAAAAGAAAGAGGAAG
AGAAAAAGAAAGAAGCGGCACCGGCACCGG
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