CF835196

Overview
NameCF835196
Unique NameCF835196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_VANPO (Ribosome biogenesis protein NSA2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NSA2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.856e-26
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSR--RKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLDH ERKRK+EARE HK SE AQK  G KGK FAKKRY+EK  M+K +  HE+S  +   K  DE  + A+P YLLDRE T  AK +S++I +K+
Sbjct:    1 MPQNEYIEQHIKQHGRRLDHEERKRKREAREAHKISERAQKLTGWKGKQFAKKRYSEKVAMRKKIKAHEQSKVKGGSKPLDESGD-ALPTYLLDREQTNTAKAISSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_SCHPO (Ribosome biogenesis protein nsa2 OS=Schizosaccharomyces pombe GN=nsa2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.851e-25
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = -3
Query:    2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337
            MPQ +YIE   +++G R DH ERKRKK ARE H  S  AQK  GIK K++ +KR  EK  MKKT+  HEE ++ ++  D   +GAVP YLLDRE  ++AK+LS+ + +K+K+
Sbjct:    1 MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQMKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKE 112          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_YARLI (Ribosome biogenesis protein NSA2 OS=Yarrowia lipolytica GN=NSA2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.047e-24
Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEES--SSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLDH ERKRK+EARE H+ S+ AQ   G + KMFAKKRYAEK  MKK +  HE+S  +   K  +     A+P YLLDR+    AK LS++I +K+
Sbjct:    1 MPQNEYIEAHIKKHGRRLDHDERKRKREAREGHRISKDAQNLTGFRAKMFAKKRYAEKVAMKKKIREHEQSKVNGTPKEHNPEDGDALPTYLLDRQQPNSAKALSSSIKQKR 112          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_USTMA (Ribosome biogenesis protein NSA2 OS=Ustilago maydis GN=NSA2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.777e-24
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = -3
Query:    5 QGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKK 331
            Q DYIE H +R+G RLDH ER+RK+ AREVHK S +AQK  G+K KM  KKR  EK  MKKTL  HEE   ++         A+P YLLDRE    AK LS+ + +++K
Sbjct:   14 QNDYIEEHIRRHGRRLDHEERQRKRAAREVHKASAVAQKVTGLKAKMLNKKRRNEKIQMKKTLKAHEERDVKQASTSSDPNQALPTYLLDREGQKDAKALSSAVKERRK 122          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_CANAL (Ribosome biogenesis protein NSA2 OS=Candida albicans GN=NSA2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.327e-23
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLD+ ERKRKKEARE H+ ++ AQ   G + K FAKKRYAEK  MKK +  H+ES  +     + ++G A+P YLLDR+    AK +S++I +K+
Sbjct:    1 MPQNEYIEQHIKKHGRRLDYEERKRKKEAREGHRVAKDAQTLKGWRAKQFAKKRYAEKVAMKKKIKAHQESKVKGPSTPKAEDGEALPTYLLDRQTNNTAKAISSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_LODEL (Ribosome biogenesis protein NSA2 OS=Lodderomyces elongisporus GN=NSA2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.733e-23
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLDH ERKRKKEARE H+ ++ AQ   G + K FAKKRY+EK  M+K +  H+ES  +     +  EG A+P YLLDR+    AK LS++I +K+
Sbjct:    1 MPQNEYIEQHIKQHGRRLDHEERKRKKEAREGHRVAKDAQTLKGWRAKQFAKKRYSEKVSMRKKIKAHQESKVKGPSTPKQDEGEALPTYLLDRQTNNTAKALSSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_CRYNE (Ribosome biogenesis protein NSA2 OS=Cryptococcus neoformans GN=NSA2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.733e-23
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = -3
Query:    5 IELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKK 319
            +E HRKR+G RLD+ E+KRK+ ARE HK S  AQK  G K K+   +R+AEK  MKKTL  H+E + ++K D  V+EGA+PAYLLDR+    AK LS+ +  ++K
Sbjct:    1 MEEHRKRHGRRLDYEEKKRKRTAREAHKASADAQKIFGHKAKLHHARRHAEKVQMKKTLKAHDERNVKQKDDGAVKEGALPAYLLDRDGQKDAKALSSAVKDRRK 105          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_PICST (Ribosome biogenesis protein NSA2 OS=Pichia stipitis GN=NSA2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.263e-23
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLDH ERKRKKEARE H+ ++ AQ   G + K FAKKRY+EK  MKK +  H+ES        +  +G A+P YLLDR+    AK +S++I +K+
Sbjct:    1 MPQNEYIEQHIKQHGRRLDHEERKRKKEAREGHRIAKDAQTLKGWRAKQFAKKRYSEKVAMKKKIKAHQESKVNGPATPKEDDGEALPTYLLDRQTNNTAKAISSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_PICGU (Ribosome biogenesis protein NSA2 OS=Pichia guilliermondii GN=NSA2 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.860e-23
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLDH ERKRK+ ARE H+ ++ AQ   G +GK FAK+RY+EK  MKK +  H+ES  +     +  +G A+P YLLDR++T  AK +S++I +K+
Sbjct:    1 MPQNEYIEKHIKQHGRRLDHEERKRKRAAREGHRVAKDAQTLKGWRGKQFAKQRYSEKVAMKKKIKAHQESKVKGPSTPKENDGEALPTYLLDRKDTNTAKAISSSIKQKR 111          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_DEBHA (Ribosome biogenesis protein NSA2 OS=Debaryomyces hansenii GN=NSA2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.860e-23
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE H K++G RLD+ ERKRKK ARE H+ ++ AQ+  G +GK FAKKRY+EK  MKK +  H+ES  +     +  +G A+P YLLDR+    AK +S++I +K+
Sbjct:    1 MPQNEYIEQHIKQHGRRLDYEERKRKKAAREGHRIAKDAQELKGWRGKQFAKKRYSEKVAMKKKIKTHQESKVKGPATPKEDDGEALPTYLLDRQTNNSAKAISSSIKQKR 111          
The following BLAST results are available for this feature:
BLAST of CF835196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NSA2_VANPO2.856e-2656.25Ribosome biogenesis protein NSA2 OS=Vanderwaltozym... [more]
NSA2_SCHPO1.851e-2550.00Ribosome biogenesis protein nsa2 OS=Schizosaccharo... [more]
NSA2_YARLI2.047e-2451.79Ribosome biogenesis protein NSA2 OS=Yarrowia lipol... [more]
NSA2_USTMA7.777e-2451.38Ribosome biogenesis protein NSA2 OS=Ustilago maydi... [more]
NSA2_CANAL1.327e-2349.55Ribosome biogenesis protein NSA2 OS=Candida albica... [more]
NSA2_LODEL1.733e-2350.45Ribosome biogenesis protein NSA2 OS=Lodderomyces e... [more]
NSA2_CRYNE1.733e-2351.43Ribosome biogenesis protein NSA2 OS=Cryptococcus n... [more]
NSA2_PICST2.263e-2349.55Ribosome biogenesis protein NSA2 OS=Pichia stipiti... [more]
NSA2_PICGU3.860e-2348.65Ribosome biogenesis protein NSA2 OS=Pichia guillie... [more]
NSA2_DEBHA3.860e-2348.65Ribosome biogenesis protein NSA2 OS=Debaryomyces h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835196 ID=CF835196; Name=CF835196; organism=Citrus sinensis; type=EST; length=357bp
TTTTTTTTTTTTTTTTGCTTATAGTGTTGCTAAGCACCTTCGCTCTTGTT
GTGTTTTCACGATCAAGCAAATAAGCAGGAACAGCACCCTCTTGAACTTC
ATCATCCACCTTTCTACGACTTGATGACTCTTCATGCATAGCCAAAGTTT
TCTTCATGAGAGCCTTCTCAGCATAGCGTTTTTTAGCAAACATCTTGCCC
TTAATACCCAAAGCCTTTTGGGCAATTTCGGAGCGCTTATGGACTTCACG
CGCCTCCTTCTTGCGCTTGCGCTCGAAGTGATCGAGACGGTAGCCATTTC
GCTTCCTGTGAAGCTCTATGTAATCTCCTTGCGGCATTTCGTAAGGGCTT
TGAAGCC
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