CF835196

Overview
NameCF835196
Unique NameCF835196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2998 contig Csv1_Contig2998:703..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_NEUCR (Ribosome biogenesis protein nsa-2 OS=Neurospora crassa GN=nsa-2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.599e-23
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE  +K +G RLD  ER RKK ARE HK+SE AQ   G++ K+FAK+R+A+K  M+K +  HEE + +   +++     VPAYLLDR N T AK LS+ I  K+
Sbjct:    1 MPQNEYIERAQKLHGKRLDTEERARKKAAREGHKQSENAQNLRGLRAKLFAKERHAQKIQMRKAIKQHEERNVKGAPEEKDPSNPVPAYLLDRSNPTSAKALSSQIKSKR 110          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_PHANO (Ribosome biogenesis protein NSA2 OS=Phaeosphaeria nodorum GN=NSA2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.766e-21
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = -3
Query:    2 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKKKK 337
            MPQ +YIE  +K++G R DH ERKRK+ ARE H  S+ AQ   G++ K++A+KR  EK  MKKT+  HEE + +     E    A+P YLLDR N   AK LS+ I +K+ +
Sbjct:    1 MPQNEYIERWQKQHGKRFDHDERKRKRIAREGHDGSKKAQNYRGLRAKLYAEKRRKEKIQMKKTIRAHEERNVKTSEPAEPSTEALPQYLLDRSNEKNAKALSSAIKQKRNE 112          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_ASPFU (Ribosome biogenesis protein nsa2 OS=Aspergillus fumigatus GN=nsa2 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.162e-21
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = -3
Query:    8 SPYEMPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 349
            S Y +    YIE  +K++G RLDH ER RK++ARE HK+S+ AQ   G++ K++ +KR+AEK  M+K +   EE + +    DE  +  +P YLLDR   T AK LS+ I  K+
Sbjct:   19 SEYSLRTSSYIERWQKQHGKRLDHDERVRKRQARESHKQSQDAQNLRGLRAKLYQQKRHAEKIQMRKRIKAQEEKNVKSSAPDEPSKTPLPQYLLDRSQATNAKALSSAIKDKR 132          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_AJECN (Ribosome biogenesis protein NSA2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=NSA2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.048e-21
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE  +K+ G RLDH ER RK+ ARE HK+S  AQ   G++ K++ KKR+AEK  MKK +   EE + +    +E     +P YLLDR   T AK LS+ I  K+
Sbjct:    1 MPQNEYIERWQKQYGERLDHEERTRKRIAREAHKQSHDAQSFRGLRAKLYQKKRHAEKIEMKKRIRAQEEKNVKSSAPNEPSSTPLPNYLLDRSQETNAKSLSSAIKNKR 110          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_EMENI (Ribosome biogenesis protein nsa2 OS=Emericella nidulans GN=nsa2 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.373e-20
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ +YIE   K++G RLDH ER RK+EAR+ H++S+ AQ   G++ K++ +KR+AEK  M+K +   EE + +     E  +  +P YLLDR   T AK LS+ I  K+
Sbjct:    1 MPQNEYIERWTKQHGKRLDHDERVRKREARQSHQQSKDAQNLRGLRAKLYQQKRHAEKIQMRKRIKAQEEKNVKSSAPSEPSKTPLPQYLLDRSEATNAKALSSAIKDKR 110          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_NEOFI (Ribosome biogenesis protein nsa2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=nsa2 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.994e-20
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = -3
Query:    8 DYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 325
            +YIE  +K++G RLDH ER RK++ARE HK+S+ AQ   G++ K++ +KR+AEK  M+K +   EE + +    DE  +  +P YLLDR   T AK LS+ I  K+
Sbjct:   15 EYIERWQKQHGKRLDHDERVRKRQARESHKQSQDAQNLRGLRAKLYQQKRHAEKIQMRKRIKAQEEKNVKSSAPDEPSKTPLPQYLLDRSQATNAKALSSAIKDKR 120          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_BOTFB (Ribosome biogenesis protein nsa2 OS=Botryotinia fuckeliana (strain B05.10) GN=nsa2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.589e-19
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = -3
Query:    8 IELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 319
            +E  RK +G RLDH ER RKK ARE HK S+ AQK  G++ K++ +KR  EK  MKK +  HEE + +    +E     +P YLLDR N T AK LS+ I  K+
Sbjct:    1 MERWRKLHGRRLDHEERSRKKAAREGHKASDDAQKLTGLRAKLYQQKRRHEKIQMKKQIKAHEERNVKSSAPNEPSTKPLPQYLLDRSNPTNAKALSSAIKNKR 104          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_ASPCL (Ribosome biogenesis protein nsa2 OS=Aspergillus clavatus GN=nsa2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.381e-19
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = -3
Query:    8 YIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 322
            YIE  +K++G RLDH ER RK++ARE HK+S+ AQ   G++ K++ +KR+ EK  M+K +   EE + +    DE  +  +P YLLDR   T AK LS+ I  K+
Sbjct:   10 YIERWQKQHGKRLDHDERVRKRQAREGHKQSQDAQNLRGLRAKLYQQKRHKEKIQMRKRIKAQEEKNVKSSAPDEPSKTPLPQYLLDRSQATNAKALSSAIKDKR 114          
BLAST of CF835196 vs. ExPASy Swiss-Prot
Match: NSA2_COCIM (Ribosome biogenesis protein NSA2 OS=Coccidioides immitis GN=NSA2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.499e-16
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = -3
Query:    8 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTISKKK 337
            MPQ + ++       + LDH ER RK+ ARE HK+S+ AQ   G++ K++ KKR+AEK  M+K +   EE   +    +E     +P YLLDR   T AK LS+ I +K+
Sbjct:    1 MPQNESVKASESE--FDLDHEERTRKRIARESHKQSQDAQTLRGLRAKLYHKKRHAEKIQMRKRIKAQEERDVKSAAPNEPSTTPLPQYLLDRSQATNAKALSSAIKEKR 108          
The following BLAST results are available for this feature:
BLAST of CF835196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NSA2_NEUCR8.599e-2349.09Ribosome biogenesis protein nsa-2 OS=Neurospora cr... [more]
NSA2_PHANO2.766e-2146.43Ribosome biogenesis protein NSA2 OS=Phaeosphaeria ... [more]
NSA2_ASPFU6.162e-2142.98Ribosome biogenesis protein nsa2 OS=Aspergillus fu... [more]
NSA2_AJECN8.048e-2146.36Ribosome biogenesis protein NSA2 OS=Ajellomyces ca... [more]
NSA2_EMENI1.373e-2043.64Ribosome biogenesis protein nsa2 OS=Emericella nid... [more]
NSA2_NEOFI3.994e-2044.34Ribosome biogenesis protein nsa2 OS=Neosartorya fi... [more]
NSA2_BOTFB2.589e-1947.12Ribosome biogenesis protein nsa2 OS=Botryotinia fu... [more]
NSA2_ASPCL3.381e-1943.81Ribosome biogenesis protein nsa2 OS=Aspergillus cl... [more]
NSA2_COCIM3.499e-1640.00Ribosome biogenesis protein NSA2 OS=Coccidioides i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835196 ID=CF835196; Name=CF835196; organism=Citrus sinensis; type=EST; length=357bp
TTTTTTTTTTTTTTTTGCTTATAGTGTTGCTAAGCACCTTCGCTCTTGTT
GTGTTTTCACGATCAAGCAAATAAGCAGGAACAGCACCCTCTTGAACTTC
ATCATCCACCTTTCTACGACTTGATGACTCTTCATGCATAGCCAAAGTTT
TCTTCATGAGAGCCTTCTCAGCATAGCGTTTTTTAGCAAACATCTTGCCC
TTAATACCCAAAGCCTTTTGGGCAATTTCGGAGCGCTTATGGACTTCACG
CGCCTCCTTCTTGCGCTTGCGCTCGAAGTGATCGAGACGGTAGCCATTTC
GCTTCCTGTGAAGCTCTATGTAATCTCCTTGCGGCATTTCGTAAGGGCTT
TGAAGCC
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