CF835215

Overview
NameCF835215
Unique NameCF835215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: CP1A1_PLEPL (Cytochrome P450 1A1 OS=Pleuronectes platessa GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 49/142 (34.51%), Postives = 71/142 (50.00%), Query Frame = 3
Query:    6 FFQLCVKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFL--DHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLL--YHFDWKLPNGMKHEDLDMTEAFATTVRRKQ 419
            F +  + E LR     P  +P    +   +NG+ IP    VF+N W I  DP+ W +P+SF P+RFL  D S   K    + + FG G+R C G       V L LA+++   HF   LP  +  E LDMT  +  T++ K+
Sbjct:  372 FLEAFILEILRHSSFLPFTIPHCTTKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLSADGSEVNKLDGEKVMAFGMGKRRCIGEVIARNEVYLFLAIIIQKLHF---LP--IPGEKLDMTPEYGLTMKHKR 508          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: CP1A1_PLAFE (Cytochrome P450 1A1 OS=Platichthys flesus GN=cyp1a1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 49/142 (34.51%), Postives = 71/142 (50.00%), Query Frame = 3
Query:    6 FFQLCVKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFL--DHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLL--YHFDWKLPNGMKHEDLDMTEAFATTVRRKQ 419
            F +  + E LR     P  +P    +   +NG+ IP    VF+N W I  DP+ W +P+SF P+RFL  D S   K    + + FG G+R C G       V L LA+++   HF   LP  +  E LDMT  +  T++ K+
Sbjct:  372 FLEAFILEILRHSSFLPFTIPHCTTKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLSADGSEVNKLDGEKVMAFGMGKRRCIGEVIARNEVYLFLAIIIQKLHF---LP--IPGEKLDMTPEYGLTMKHKR 508          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: THAS_RAT (Thromboxane-A synthase OS=Rattus norvegicus GN=Tbxas1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3
Query:    6 FFQLCVKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFLDHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLLYHF 338
            +  + V ETLR++P A     RE  + C++ G  IP  + + +   A+  DP+ W  P +F PERF   +   +   F ++PFGAG R C G+  GL  V+L L  +L+ F
Sbjct:  392 YLDMVVAETLRMYPPA-FRFTREAAQDCEVLGQHIPAGSVLEIAVGALHHDPEHWPNPETFDPERFTAEA-RLQQKPFTYLPFGAGPRSCLGVRLGLLVVKLTLLQVLHKF 500          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: CP4P2_DROME (Probable cytochrome P450 4p2 OS=Drosophila melanogaster GN=Cyp4p2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 35/106 (33.02%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   21 VKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFLDHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLLYHF 338
            +KET+RL+P  P++  +   E    NG  +P ++++ ++ + I R+PK W  P  F PERFL  +   K   + +IPF AG+R C G  + +  ++  + ++L HF
Sbjct:  381 IKETMRLYPSIPIMGRQTLQETELENGLILPKRSQINIHVFDIHRNPKYWESPEEFRPERFLPQNC-LKRHPYAYIPFSAGQRNCIGQKYAMQEMKTLMVVILKHF 485          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: CP1A3_ONCMY (Cytochrome P450 1A3 OS=Oncorhynchus mykiss GN=cyp1a3 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 47/146 (32.19%), Postives = 70/146 (47.95%), Query Frame = 3
Query:   21 VKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFL--DHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGMKHEDLDMTEAFATTVRRKQDLCMIPIPYHP 452
            + E  R     P  +P    +   +NG+ IP    VF+N W +  DP+ W EP+SF P+RFL  D +   K    + + FG G+R C G + G   V L LA+LL    ++   G     LDMT  +  T++ K+  C +     P
Sbjct:  377 ILEIFRHSSFLPFTIPHCTIKDTSLNGYFIPKDTCVFINQWQVNHDPELWKEPSSFNPDRFLSADGTELNKLEGEKVLVFGMGKRRCIGEAIGRNEVYLFLAILLQRLRFQEKPG---HPLDMTPEYGLTMKHKR--CQLKASMRP 517          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: C356_FUNHE (Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=cyp3a56 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 3
Query:    3 KFFQLCVKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFLDHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKL 350
            ++    + E+LRL P+A  L  R      +ING  IP    V +  W + RDP+ W EP +F PERF   + D     + ++PFG+G R C GM F L  ++L +  +L  + + +
Sbjct:  353 EYLDCVINESLRLFPIAARL-ERVAKAAVEINGIVIPKDMVVMIPTWPLHRDPEIWPEPEAFKPERFSKKNKD-NIDPYIYMPFGSGPRNCIGMRFALVLIKLAVVEILQQYSFSV 466          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: THAS_HUMAN (Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3
Query:    6 FFQLCVKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFLDHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLLYHF 338
            +  + + ETLR++P A     RE  + C++ G  IP  A + +   A+  DP+ W  P +F PERF   +   +   F ++PFGAG R C G+  GL  V+L L  +L+ F
Sbjct:  392 YLDMVIAETLRMYPPA-FRFTREAAQDCEVLGQRIPAGAVLEMAVGALHHDPEHWPSPETFNPERFTAEA-RQQHRPFTYLPFGAGPRSCLGVRLGLLEVKLTLLHVLHKF 500          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: CP3AA_MESAU (Lithocholate 6-beta-hydroxylase OS=Mesocricetus auratus GN=CYP3A10 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 3
Query:    3 KFFQLCVKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFLDHSIDYKGT--NFEFIPFGAGRRICPGMSFGLASVELPLAMLLYHF 338
            ++  + + E LRL+P+A  L  R   +  +ING  IP    V V  + + RDP+ W EP  F PERF   S + KG+   + ++PFG G R C GM F L S++L +  +L +F
Sbjct:  354 EYLDMVINEGLRLYPIANRL-ERISKKAVEINGLFIPKGITVMVPTYPLHRDPEYWPEPEEFRPERF---SKENKGSIDPYVYMPFGNGPRNCIGMRFALLSMKLAVVSVLQNF 463          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: CP1A1_SPAAU (Cytochrome P450 1A1 OS=Sparus aurata GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 45/140 (32.14%), Postives = 68/140 (48.57%), Query Frame = 3
Query:    6 FFQLCVKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFL--DHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGMKHEDLDMTEAFATTVRRKQ 419
            F +  + E  R     P  +P    +   +NG+ IP    VF+N W I  DP+ W +P+SF P+RFL  D +   K    + + FG G+R C G       V L LA+L+ +  +    G   E LDMT  +  T++ K+
Sbjct:  372 FLEAFILEIFRHSSFLPFTIPHCSSKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLNTDGTELNKLEGEKMMVFGLGKRRCIGEVIARNEVFLFLAILVQNLRFHAKPG---EPLDMTPEYGLTMKHKR 508          
BLAST of CF835215 vs. ExPASy Swiss-Prot
Match: CP1A1_DICLA (Cytochrome P450 1A1 OS=Dicentrarchus labrax GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 45/140 (32.14%), Postives = 68/140 (48.57%), Query Frame = 3
Query:    6 FFQLCVKETLRLHPVAPLLLPRECGERCQINGFDIPVKAKVFVNAWAIGRDPKDWTEPASFIPERFL--DHSIDYKGTNFEFIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGMKHEDLDMTEAFATTVRRKQ 419
            F +  + E  R     P  +P    +   +NG+ IP    VF+N W I  DP+ W +P+SF P+RFL  D +   K    + + FG G+R C G       V L LA+++    +K   G   E LDMT  +  T++ K+
Sbjct:  373 FLEAFILEIFRHSSFLPFTIPHCTSKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLSADGTELNKLEGEKVMVFGLGKRRCIGEVIARNGVFLFLAIIVQKLHFKTLPG---EPLDMTPEYGLTMKHKR 509          
The following BLAST results are available for this feature:
BLAST of CF835215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 277
Match NameE-valueIdentityDescription
CP1A1_PLEPL4.068e-1234.51Cytochrome P450 1A1 OS=Pleuronectes platessa GN=cy... [more]
CP1A1_PLAFE4.068e-1234.51Cytochrome P450 1A1 OS=Platichthys flesus GN=cyp1a... [more]
THAS_RAT5.313e-1235.14Thromboxane-A synthase OS=Rattus norvegicus GN=Tbx... [more]
CP4P2_DROME5.313e-1233.02Probable cytochrome P450 4p2 OS=Drosophila melanog... [more]
CP1A3_ONCMY5.313e-1232.19Cytochrome P450 1A3 OS=Oncorhynchus mykiss GN=cyp1... [more]
C356_FUNHE5.313e-1233.62Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=c... [more]
THAS_HUMAN6.939e-1235.14Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 P... [more]
CP3AA_MESAU6.939e-1237.72Lithocholate 6-beta-hydroxylase OS=Mesocricetus au... [more]
CP1A1_SPAAU6.939e-1232.14Cytochrome P450 1A1 OS=Sparus aurata GN=cyp1a1 PE=... [more]
CP1A1_DICLA6.939e-1232.14Cytochrome P450 1A1 OS=Dicentrarchus labrax GN=cyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835215 ID=CF835215; Name=CF835215; organism=Citrus sinensis; type=EST; length=669bp
TGAAATTTTTCCAATTATGTGTTAAAGAGACTTTGAGATTACATCCTGTT
GCCCCGTTGCTACTTCCAAGAGAATGTGGAGAGAGATGTCAAATTAATGG
ATTTGACATTCCTGTGAAAGCTAAAGTTTTTGTTAATGCATGGGCGATTG
GAAGAGATCCCAAGGACTGGACTGAACCTGCGAGCTTTATTCCAGAGAGG
TTCCTCGATCATTCTATTGACTACAAGGGTACTAATTTTGAATTCATACC
ATTTGGAGCTGGTAGGAGGATATGCCCTGGAATGTCATTTGGTCTGGCCA
GCGTGGAACTTCCACTGGCGATGCTATTATACCATTTTGACTGGAAACTA
CCAAATGGTATGAAGCATGAAGATTTGGACATGACCGAGGCCTTTGCCAC
GACAGTAAGAAGAAAACAAGATTTGTGCATGATTCCTATTCCTTACCATC
CTTCATCTGTTGCATAAGAACTAAAGGAAAATTTTATTATTATTCTTATT
AGTATTTGTTATCAACTGTCTCTGAAACTCTTTTTGTTTTTGTAGACCTT
TGCTGGTTCCTGAGATTTAAATTCATGGTGTACACTTTTGTTTCTCTCTG
TCTTACTCTCTCCNTAAGTTTTACTTTTTTTTTGGATAAAATAAACAGCT
AATATTTTCATGATTGGAA
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