CF835228

Overview
NameCF835228
Unique NameCF835228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  236 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----DVGVKMERPA--DEPIPEA 577
            GFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+       + G K ERP   + P+ E+
Sbjct:  144 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERPEGYEPPVQES 263          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.783e-20
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -2
Query:  236 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPEA 577
            GFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K ERP   + P+ E+
Sbjct:  144 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKGEAGDKSERPEGYEPPVQES 262          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.041e-20
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  296 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 577
            GFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+H D
Sbjct:  144 GFTSKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHND 237          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.188e-20
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  296 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 577
            GFT +     ++TCYAQ SQI+ IR+ M +I+     S DLK +V K + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  L+E+HGD
Sbjct:  144 GFTIKDQVSQRKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPLHDVYIRKVKVLKKPRFDLANLLELHGD 237          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = -2
Query:  368 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNV 574
            FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A+SC L+ L  K I E+IGREIEKAT  IYPLQNV
Sbjct:  142 FTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = -2
Query:  260 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 574
            FT  +P   +   YAQ ++I++IR ++ EI+  + ++CDLK +V K I + I ++  KA   IYPL   FIRKVK+LK PK DL +LME+HG+  S   G  + RP
Sbjct:  143 FTPSVPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRP 248          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 42/106 (39.62%), Postives = 70/106 (66.04%), Query Frame = -2
Query:  260 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 574
            FTK+  +Q K   YAQ ++I+++R K+ E++  + A CDLK +V+K I + IG++      SI+PL    +RKVK+LK PK DLG+++E+H +  +++ G  + RP
Sbjct:  142 FTKKQEDQ-KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRP 246          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  263 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFI--------------AEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-------SEDVGVKMER 574
            FTK+  +Q K+T YA+ S+++ IR+KM +I+    +S DLK +V+  I              A  +  +I     SI+P+ NVFIRKVK+LK PK D  KL E++          +E+VG  +ER
Sbjct:  141 FTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELYASSATSTIAPTEEVGTAVER 265          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = -2
Query:  302 TCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 541
            TCYA++SQ+R IRRK+   +  +AA   +    +  I E   ++IEK T +I+PLQN+ IRKVK+LK PK D  K+ E++
Sbjct:  159 TCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ENCCU (40S ribosomal protein S1 OS=Encephalitozoon cuniculi GN=RPS1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = -2
Query:  338 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKA 577
            G T+R P  VK+TCY + S  ++IR+ M +++  + + CD++ +++K   E +G+ IE+    I+PLQN  +RKVK +K+
Sbjct:   93 GVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIKS 172          
The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
RS3A_SPOFR1.365e-2043.3340S ribosomal protein S3a OS=Spodoptera frugiperda... [more]
RS3A_BOMMO1.783e-2043.7040S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1[more]
RS3A_DROGR3.041e-2047.8740S ribosomal protein S3a OS=Drosophila grimshawi ... [more]
RS3A_CULQU5.188e-2048.9440S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_PODAN3.718e-1865.2240S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_SCHJA5.368e-1743.4040S ribosomal protein S3a OS=Schistosoma japonicum... [more]
RS3A_TAESO2.040e-1639.6240S ribosomal protein S3a OS=Taenia solium PE=2 SV... [more]
RS3A_DICDI2.757e-1336.8040S ribosomal protein S3a OS=Dictyostelium discoid... [more]
RS3A_TETTH3.601e-1345.0040S ribosomal protein S3a OS=Tetrahymena thermophi... [more]
RS3A_ENCCU3.370e-1137.5040S ribosomal protein S1 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bp
CCCCTGAGTTTTTTTTTTTTTTTTATCTAATCCACTGGAATAAAGAATAA
GGTAACCCCTTTTAATACCACAAACCGCTGCAGCCATCTCAAATATCACC
GTAGAATAAAATATGTAAACTCAAAACAAATTTGAGTTCATCACAAACAA
AACTGCCCAAAAATTACTAGATCTGATTGGTTATAAAGACAAACTACAAA
AATTTCTTTATTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGG
CTCATCAGCTGGCCTTTCCATCTTTACACCAACATCCTCAGAGTAATCAC
CATGAACCTCCATCAACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATC
TTCACTTTGCGAATGAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGC
CTTCTCAATCTCTCTTCCAATTATTTCAGCAATGAACTTTTCGACCAAGC
CCTTAAGATCACAGGATGCTGCCTGAGCAATCATGATCTCCCTCATCTTG
CGGCGAATCTGTCTAATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAAC
CTGATTTGGAAGTCTCTTGGTGAATCCA
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