CF835228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20 Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = -2 Query: 236 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----DVGVKMERPA--DEPIPEA 577 GFT + ++TCYAQ +Q+R IR+KM EI+ + +L+ +V K I + I ++IEKA IYPL++V IRKVK+LK P+F++ KLME+HG+ + G K ERP + P+ E+ Sbjct: 144 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERPEGYEPPVQES 263
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.783e-20 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -2 Query: 236 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPEA 577 GFT + ++TCYAQ +Q+R IR+KM EI+ + +L+ +V K I + I ++IEKA IYPL++V IRKVK+LK P+F++ KLME+HG+ + G K ERP + P+ E+ Sbjct: 144 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKGEAGDKSERPEGYEPPVQES 262
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.041e-20 Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -2 Query: 296 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 577 GFT + ++TCYAQ SQ+R+IR +M +I+ + + DLK LV K + I ++IEK+ IYPL +V+IRKVK+LK P+FD+ KL+E+H D Sbjct: 144 GFTSKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHND 237
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 5.188e-20 Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -2 Query: 296 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 577 GFT + ++TCYAQ SQI+ IR+ M +I+ S DLK +V K + + I ++IEKA +YPL +V+IRKVK+LK P+FDL L+E+HGD Sbjct: 144 GFTIKDQVSQRKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPLHDVYIRKVKVLKKPRFDLANLLELHGD 237
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18 Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = -2 Query: 368 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNV 574 FTKR PNQ+K+T YA +SQIR IR+KM EI+ +A+SC L+ L K I E+IGREIEKAT IYPLQNV Sbjct: 142 FTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17 Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = -2 Query: 260 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 574 FT +P + YAQ ++I++IR ++ EI+ + ++CDLK +V K I + I ++ KA IYPL FIRKVK+LK PK DL +LME+HG+ S G + RP Sbjct: 143 FTPSVPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRP 248
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16 Identity = 42/106 (39.62%), Postives = 70/106 (66.04%), Query Frame = -2 Query: 260 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 574 FTK+ +Q K YAQ ++I+++R K+ E++ + A CDLK +V+K I + IG++ SI+PL +RKVK+LK PK DLG+++E+H + +++ G + RP Sbjct: 142 FTKKQEDQ-KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRP 246
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13 Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = -2 Query: 263 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFI--------------AEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-------SEDVGVKMER 574 FTK+ +Q K+T YA+ S+++ IR+KM +I+ +S DLK +V+ I A + +I SI+P+ NVFIRKVK+LK PK D KL E++ +E+VG +ER Sbjct: 141 FTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELYASSATSTIAPTEEVGTAVER 265
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13 Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = -2 Query: 302 TCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 541 TCYA++SQ+R IRRK+ + +AA + + I E ++IEK T +I+PLQN+ IRKVK+LK PK D K+ E++ Sbjct: 159 TCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ENCCU (40S ribosomal protein S1 OS=Encephalitozoon cuniculi GN=RPS1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11 Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = -2 Query: 338 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKA 577 G T+R P VK+TCY + S ++IR+ M +++ + + CD++ +++K E +G+ IE+ I+PLQN +RKVK +K+ Sbjct: 93 GVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIKS 172 The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 150
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bpback to top |