CF835228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.506e-27 Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = -2 Query: 269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574 FTKR PNQ+K+T YAQ+S++R++R+KM EIM + ++C L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 142 FTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.506e-27 Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = -2 Query: 269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574 FTKR PNQ+K+T YAQ+S++R++R+KM EIM + ++C L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 142 FTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 1.506e-27 Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = -2 Query: 269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574 FTKR PNQ+K+T YAQ+S++R++R+KM EIM + ++C L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 142 FTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PLAYO (40S ribosomal protein S3a OS=Plasmodium yoelii yoelii GN=PY02291 PE=3 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 2.569e-27 Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = -2 Query: 278 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 574 FTK+ PNQ K TCYAQ SQI++IR+KM +IM A+A+ LK LV+K I E IG+E+EK I+PLQNV IRKVKILK PK D+ KLME+H D ED G Sbjct: 142 FTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMHAEASKVLLKDLVKKIIPESIGKEVEKQCKKIFPLQNVLIRKVKILKRPKLDISKLMELHSDPKEDSG 240
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.569e-27 Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574 FTKR PNQ+K+T YA++SQIR IR+K+ EI+ +A++ L L K I E+IGREIEKAT IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER E + E+ Sbjct: 142 FTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.569e-27 Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574 FTKR PNQ+K+T YA++SQIR IR+K+ EI+ +A++ L L K I E+IGREIEKAT IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER E + E+ Sbjct: 142 FTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.569e-27 Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574 FTKR PNQ+K+T YA++SQIR IR+K+ EI+ +A+S L L K I E+IGREIEK+T IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER E + E+ Sbjct: 142 FTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASSRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3) HSP 1 Score: 121.324 bits (303), Expect = 3.355e-27 Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = -2 Query: 236 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMERP--ADEPIPEA 577 GFTKR NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G K+ER + PI E+ Sbjct: 141 GFTKRRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYEPPIQES 265
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PLAF7 (40S ribosomal protein S3a OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P7.35 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.355e-27 Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = -2 Query: 278 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 574 FTK+ NQ K TCYAQ SQI++IR+KM +IM A+A+ LK LV+KFI E IG+EIEK IYPLQNV IRKVKILK PK D+ KLME+H D E+ G Sbjct: 142 FTKKRQNQTKSTCYAQTSQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDPKEESG 240
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3) HSP 1 Score: 121.324 bits (303), Expect = 3.355e-27 Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = -2 Query: 263 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 577 GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G K+ER Sbjct: 141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252 The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 150
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bpback to top |