CF835229

Overview
NameCF835229
Unique NameCF835229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_THEAN (40S ribosomal protein S3a OS=Theileria annulata GN=TA17795 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.209e-21
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 301
            P Q+K TCY  +S++R I +KM  +M  +A++  LK LV+K I E IG+EIEKA  SI+PLQNV +RK+K+LK PKFDL KLME H    E+ G
Sbjct:  147 PGQLKSTCYVRSSKVRLIHKKMVAVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESHNYSGEEEG 240          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_LACTC (40S ribosomal protein S1 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.209e-21
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 310
            PNQVK+ CYA +S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+
Sbjct:  147 PNQVKKACYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGEASGEEKGKKV 244          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.209e-21
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   26 QVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEPIP 337
            Q+K+T YA +S+IRQIR KM E M  +    DLK +  K + + IG++IEKA   IYPLQ+V IRKVKILK PKF++G+LME+H D   ++   G K+ERP D   P
Sbjct:  146 QLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFEIGRLMEMHTDVSTFTSAEGEKIERPDDYEPP 252          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.579e-21
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 2
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKRT YA +S IRQIR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRTSYAQSSHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLLSLHGEASAEEKGKKVAGFKDE 250          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_THEPA (40S ribosomal protein S3a OS=Theileria parva GN=TP03_0697 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED 295
            P Q+K TCY   S++R I +KM  +M  +A++  LK LV+K I E IG+EIEKA  SI+PLQNV +RK+K+LK PKFDL KLME H +YS D
Sbjct:  147 PGQLKSTCYVRTSKVRLIHKKMVSVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESH-NYSGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.518e-21
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE------DVGVKMERPA--DEPIPE 340
            ++T YA  SQ+R IRRKM  I+  +   CDLKG+V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD         + G K++RP   + P+ E
Sbjct:  154 RKTSYAQHSQVRNIRRKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGGSKTGEVGETGSKVDRPEGYEPPVQE 264          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.595e-21
Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 2
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 310
            NQ+K+T YA +SQ+  IR+KM EIM  + ++  L  L  K I E+IGREIEKA   IYPLQNV IRKVK+LK  KFDLG L+ +HG+  +E+ G K+
Sbjct:  148 NQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFDLGALLALHGESVTEENGKKV 244          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.595e-21
Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPE 340
            ++TCYA  +Q+R IR+KM EI+     S DLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S++ G +++RP   + P+ E
Sbjct:  154 RKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQE 261          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_VANPO (40S ribosomal protein S1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.002e-21
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKRT YA +S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRTSYAQSSHIRAIRKVISEILTREVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSGEEKGKKVSGFKDE 250          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.002e-21
Identity = 50/108 (46.30%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--YSEDVGVKMERPA--DEPIPEA 343
            ++TCYA  +Q+RQIRRKM + + +  ++ DL+ +V K I + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD   S++ G K+ RP   + P+ E+
Sbjct:  154 RKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGSDEPGAKVSRPEAYEPPVQES 261          
The following BLAST results are available for this feature:
BLAST of CF835229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
RS3A_THEAN1.209e-2154.2640S ribosomal protein S3a OS=Theileria annulata GN... [more]
RS3A_LACTC1.209e-2154.0840S ribosomal protein S1 OS=Lachancea thermotolera... [more]
RS3A_BRUMA1.209e-2151.4040S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_KLULA1.579e-2153.4040S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_THEPA2.063e-2156.5240S ribosomal protein S3a OS=Theileria parva GN=TP... [more]
RS3A_LYSTE3.518e-2145.9540S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A_PICPG4.595e-2154.6440S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_PERAM4.595e-2146.3040S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_VANPO6.002e-2153.4040S ribosomal protein S1 OS=Vanderwaltozyma polysp... [more]
RS3A_TRIIF6.002e-2146.3040S ribosomal protein S3a OS=Triatoma infestans PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835229 ID=CF835229; Name=CF835229; organism=Citrus sinensis; type=EST; length=568bp
TTGGATTCACAATTGACTTCCAAATCAGGTTAAGAGGACTTGCTACGCAC
CCGCCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGATT
GCTCAGGCAGCATCCTGTGATCTTAAGGGCTTGGTCGAAAAGTTCATTGC
TGAAATAATTGGAAGAGAGATTGAGAAGGCAACCTTAAGCATATACCCCT
TACAAAATGTTTTCATTCGCAAAGTGAAGATCTTGAAAGCTCCTAAGTTT
GATCTTGGAAAGTTGATGGAGGTTCATGGTGATTACTCTGAGGATGTTGG
TGTAAAGATGGAAAGGCCAGCTGATGAGCCCATTCCTGAAGCACCAACTG
AAGTGATTGGAGCTTGAATAAAGAAATTTTTGTAGTTTGTCTTTATAACC
AATCAGATCTAGTAATTTTTGGGCAGTTTTGTTTGTGATGAACTCAAATT
TGTTTTGAGTTTACATATTTTATTCTACCTGATATTTGAGATGGCTGCAG
CGGTTTGTGGTATGAACATGATTACCTTATTCTTTATTCCAGTGGATTAG
ATAAAAAAAAAAAAAAAA
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