CF835229
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_CANGA (40S ribosomal protein S1 OS=Candida glabrata GN=RPS1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.337e-20 Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 2 Query: 23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328 NQVKRT YA +S IR IR+ + +I+ + ++ L K I E+I +EIE AT I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+ DE Sbjct: 148 NQVKRTAYAQSSHIRAIRKVISDILTREVSNSTLAQFTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSAEEKGKKVSGFKDE 250
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20 Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KMERPADEPIP 337 NQVK+T Y S+IR+IR +M + + CDLK +V K I + IG++IEK +YPLQ V+IRKVKI+K PK DLG+L ++HGD S VG K++RP D P Sbjct: 146 NQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKIDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20 Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 2 Query: 32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------DVGVKMERPA--DEPIPEA 343 ++TCYA +Q+R IR+KM EI+ + DLK +V K + + I ++IEKA+ IYPL +V+IRKVK+LK P+F+L KL+E+HGD + + G K+++P + P+ EA Sbjct: 154 RKTCYAQHTQVRSIRKKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEA 266
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.281e-20 Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKMERPA--DEPIPEA 343 ++TCYA +Q+R IR+KM EI+ + +S DLK V K I + I ++IEK+ SIYP+ V+IRKVK+LK PKFD+GKL+++HG+ + GV + RP + PI E+ Sbjct: 154 RKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPIHEVYIRKVKVLKKPKFDMGKLLDMHGEGAVTKRVTTEDGTGVVISRPEGYEPPIQES 267
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_ASHGO (40S ribosomal protein S1 OS=Ashbya gossypii GN=RPS1 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.979e-20 Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 2 Query: 23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 310 NQ+K+T YA +S IR IR+ + EI+ + + L L K I E+I +EIE AT I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+ Sbjct: 148 NQIKKTSYAQSSHIRAIRKVISEILTREVQNATLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGESSGEEKGKKV 244
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3) HSP 1 Score: 98.2117 bits (243), Expect = 2.979e-20 Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 2 Query: 32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283 ++TCYA SQI+ IR KM I+ + S DLKG+VEK + + I ++IEKA +YPL +V+IRKVK+LK P+FDL LME+HGD Sbjct: 154 RKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 237
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 3.890e-20 Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KMERPADEPIP 337 NQVK+T Y S+IR+IR +M + + CDLK +V K I + IG++IEK +YPLQ V+IRKVKI+K PK DLG+L ++HGD S VG K++RP D P Sbjct: 146 NQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_ANODA (40S ribosomal protein S3a OS=Anopheles darlingi PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.132e-19 Identity = 44/84 (52.38%), Postives = 63/84 (75.00%), Query Frame = 2 Query: 32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283 ++TCYA SQI+ IR++M I+ + + DLKG+VEK + + I ++IEKA +YPL +VFIRKVK+LK P+FDL L+E+HGD Sbjct: 154 RKTCYAQHSQIKNIRQRMTTIIKREIINSDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVFIRKVKVLKKPRFDLSSLLELHGD 237
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19 Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 2 Query: 32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----------YSEDVGVKMERPA--DEPIPEA 343 ++TCYA SQI++IRRKM I+ S DLK +V K + + I ++IEK+ IYPL +V+IRKVK+LK P+FDL L+E+HGD + + GV ++RP + P+ E+ Sbjct: 154 RKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRPEGYEPPVQES 269
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAST (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae GN=RPS1B PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19 Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328 NQVKR YA +S IR IR+ + EI+ + + L L K I E+I +EIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+ DE Sbjct: 148 NQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250 The following BLAST results are available for this feature:
BLAST of CF835229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 149
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835229 ID=CF835229; Name=CF835229; organism=Citrus sinensis; type=EST; length=568bpback to top |