CF835229

Overview
NameCF835229
Unique NameCF835229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:451..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS7 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS6 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS1 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_MONBE (40S ribosomal protein S3a OS=Monosiga brevicollis GN=34920 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEPIPEAPTEV 355
            N  ++TCYA ++Q R +R KM EIM  + A+CDLK  V K +   IG+EI+K   SI+PLQ+V+IRKVK+LK P+FD+ KL+E+HG+    + D G  + +  +   P+  T V
Sbjct:  147 NSDRKTCYAQSAQKRALRAKMVEIM-QREATCDLKEFVSKLMPGTIGQEIQKKCQSIFPLQDVYIRKVKVLKKPRFDVSKLLELHGEAGGVTADKGKTVAKSGEFVEPKPQTSV 259
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAST (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae GN=RPS1A PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS7 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS6 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS2 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS1 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
[Close]
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROWI (40S ribosomal protein S3a OS=Drosophila willistoni GN=RpS3A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.293e-19
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2 
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----YSEDV----GVKMERPA--DEPIPEA 343
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD     SE V    G  ++RP   + P+ EA
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDISKLLELHGDGGGKTSEAVVSAEGAVVDRPEGYEPPVQEA 267
The following BLAST results are available for this feature:
BLAST of CF835229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
RS3A2_YEAS71.478e-1949.5140S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS61.478e-1949.5140S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS11.478e-1949.5140S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A_MONBE2.521e-1944.7440S ribosomal protein S3a OS=Monosiga brevicollis ... [more]
RS3A1_YEAST2.521e-1949.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS72.521e-1949.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS62.521e-1949.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS22.521e-1949.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS12.521e-1949.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A_DROWI3.293e-1944.7440S ribosomal protein S3a OS=Drosophila willistoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835229 ID=CF835229; Name=CF835229; organism=Citrus sinensis; type=EST; length=568bp
TTGGATTCACAATTGACTTCCAAATCAGGTTAAGAGGACTTGCTACGCAC
CCGCCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGATT
GCTCAGGCAGCATCCTGTGATCTTAAGGGCTTGGTCGAAAAGTTCATTGC
TGAAATAATTGGAAGAGAGATTGAGAAGGCAACCTTAAGCATATACCCCT
TACAAAATGTTTTCATTCGCAAAGTGAAGATCTTGAAAGCTCCTAAGTTT
GATCTTGGAAAGTTGATGGAGGTTCATGGTGATTACTCTGAGGATGTTGG
TGTAAAGATGGAAAGGCCAGCTGATGAGCCCATTCCTGAAGCACCAACTG
AAGTGATTGGAGCTTGAATAAAGAAATTTTTGTAGTTTGTCTTTATAACC
AATCAGATCTAGTAATTTTTGGGCAGTTTTGTTTGTGATGAACTCAAATT
TGTTTTGAGTTTACATATTTTATTCTACCTGATATTTGAGATGGCTGCAG
CGGTTTGTGGTATGAACATGATTACCTTATTCTTTATTCCAGTGGATTAG
ATAAAAAAAAAAAAAAAA
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