CF835229

Overview
NameCF835229
Unique NameCF835229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROMO (40S ribosomal protein S3a OS=Drosophila mojavensis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDISKLLELHGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS2 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 2
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 328
            NQVKR  YA +S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S ++ G K+    DE
Sbjct:  148 NQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGKEKGKKVSGFKDE 250          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROVI (40S ribosomal protein S3a OS=Drosophila virilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROSE (40S ribosomal protein S3a OS=Drosophila sechellia GN=RpS3A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROPS (40S ribosomal protein S3a OS=Drosophila pseudoobscura pseudoobscura GN=RpS3A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROPE (40S ribosomal protein S3a OS=Drosophila persimilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROME (40S ribosomal protein S3a OS=Drosophila melanogaster GN=RpS3A PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROER (40S ribosomal protein S3a OS=Drosophila erecta GN=RpS3A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROAN (40S ribosomal protein S3a OS=Drosophila ananassae GN=RpS3A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDV-----GVKMERPA--DEPIPEA 343
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD    S D      G  ++RP   + P+ EA
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSSDAVVSTEGAVIDRPEGYEPPVQEA 267          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPEA 343
            ++TCYA  +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K ERP   + P+ E+
Sbjct:  154 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKREAGDKSERPEGYEPPVQES 262          
The following BLAST results are available for this feature:
BLAST of CF835229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
RS3A_DROMO4.301e-1950.0040S ribosomal protein S3a OS=Drosophila mojavensis... [more]
RS3A2_YEAS24.301e-1948.5440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A_DROVI5.617e-1950.0040S ribosomal protein S3a OS=Drosophila virilis GN... [more]
RS3A_DROSE5.617e-1950.0040S ribosomal protein S3a OS=Drosophila sechellia ... [more]
RS3A_DROPS5.617e-1950.0040S ribosomal protein S3a OS=Drosophila pseudoobsc... [more]
RS3A_DROPE5.617e-1950.0040S ribosomal protein S3a OS=Drosophila persimilis... [more]
RS3A_DROME5.617e-1950.0040S ribosomal protein S3a OS=Drosophila melanogast... [more]
RS3A_DROER5.617e-1950.0040S ribosomal protein S3a OS=Drosophila erecta GN=... [more]
RS3A_DROAN5.617e-1943.8640S ribosomal protein S3a OS=Drosophila ananassae ... [more]
RS3A_BOMMA5.617e-1944.0440S ribosomal protein S3a OS=Bombyx mandarina PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835229 ID=CF835229; Name=CF835229; organism=Citrus sinensis; type=EST; length=568bp
TTGGATTCACAATTGACTTCCAAATCAGGTTAAGAGGACTTGCTACGCAC
CCGCCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGATT
GCTCAGGCAGCATCCTGTGATCTTAAGGGCTTGGTCGAAAAGTTCATTGC
TGAAATAATTGGAAGAGAGATTGAGAAGGCAACCTTAAGCATATACCCCT
TACAAAATGTTTTCATTCGCAAAGTGAAGATCTTGAAAGCTCCTAAGTTT
GATCTTGGAAAGTTGATGGAGGTTCATGGTGATTACTCTGAGGATGTTGG
TGTAAAGATGGAAAGGCCAGCTGATGAGCCCATTCCTGAAGCACCAACTG
AAGTGATTGGAGCTTGAATAAAGAAATTTTTGTAGTTTGTCTTTATAACC
AATCAGATCTAGTAATTTTTGGGCAGTTTTGTTTGTGATGAACTCAAATT
TGTTTTGAGTTTACATATTTTATTCTACCTGATATTTGAGATGGCTGCAG
CGGTTTGTGGTATGAACATGATTACCTTATTCTTTATTCCAGTGGATTAG
ATAAAAAAAAAAAAAAAA
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