CF835229

Overview
NameCF835229
Unique NameCF835229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:451..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_PLAYO (40S ribosomal protein S3a OS=Plasmodium yoelii yoelii GN=PY02291 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 57/94 (60.64%), Postives = 69/94 (73.40%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 301
            PNQ K TCYA  SQI++IR+KM +IM A+A+   LK LV+K I E IG+E+EK    I+PLQNV IRKVKILK PK D+ KLME+H D  ED G
Sbjct:  147 PNQTKTTCYAQTSQIKKIRKKMVDIMHAEASKVLLKDLVKKIIPESIGKEVEKQCKKIFPLQNVLIRKVKILKRPKLDISKLMELHSDPKEDSG 240          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_PLAF7 (40S ribosomal protein S3a OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P7.35 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 2
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 301
            NQ K TCYA  SQI++IR+KM +IM A+A+   LK LV+KFI E IG+EIEK    IYPLQNV IRKVKILK PK D+ KLME+H D  E+ G
Sbjct:  148 NQTKSTCYAQTSQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDPKEESG 240          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 310
            PNQVK+T YA +S++R+IR+KM EIM  + ++  L  L +K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG LM +HG+  SE+ G K+
Sbjct:  147 PNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGNLMSLHGEGASEEKGKKV 244          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 343
            PNQ+K+T YA +SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  147 PNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 343
            PNQ+K+T YA +SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  147 PNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 343
            PNQ+K+T YA +SQIR IR+K+ EI+  +A+S  L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  147 PNQIKKTTYARSSQIRAIRKKITEIIQREASSRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.169e-24
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 310
            PNQ+K+T YA +S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  147 PNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.169e-24
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 310
            PNQ+K+T YA +S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  147 PNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.169e-24
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 310
            PNQ+K+T YA +S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  147 PNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.993e-24
Identity = 61/109 (55.96%), Postives = 81/109 (74.31%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 343
            PNQ+K+T YA +SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  147 PNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
The following BLAST results are available for this feature:
BLAST of CF835229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
RS3A_PLAYO8.947e-2560.6440S ribosomal protein S3a OS=Plasmodium yoelii yoe... [more]
RS3A_PLAF78.947e-2562.3740S ribosomal protein S3a OS=Plasmodium falciparum... [more]
RS3A_PICGU8.947e-2558.1640S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_AJEDS8.947e-2556.8840S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR8.947e-2556.8840S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJECN8.947e-2556.8840S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_CANDC1.169e-2456.1240S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW1.169e-2456.1240S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL1.169e-2456.1240S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_AJECG1.993e-2455.9640S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835229 ID=CF835229; Name=CF835229; organism=Citrus sinensis; type=EST; length=568bp
TTGGATTCACAATTGACTTCCAAATCAGGTTAAGAGGACTTGCTACGCAC
CCGCCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGATT
GCTCAGGCAGCATCCTGTGATCTTAAGGGCTTGGTCGAAAAGTTCATTGC
TGAAATAATTGGAAGAGAGATTGAGAAGGCAACCTTAAGCATATACCCCT
TACAAAATGTTTTCATTCGCAAAGTGAAGATCTTGAAAGCTCCTAAGTTT
GATCTTGGAAAGTTGATGGAGGTTCATGGTGATTACTCTGAGGATGTTGG
TGTAAAGATGGAAAGGCCAGCTGATGAGCCCATTCCTGAAGCACCAACTG
AAGTGATTGGAGCTTGAATAAAGAAATTTTTGTAGTTTGTCTTTATAACC
AATCAGATCTAGTAATTTTTGGGCAGTTTTGTTTGTGATGAACTCAAATT
TGTTTTGAGTTTACATATTTTATTCTACCTGATATTTGAGATGGCTGCAG
CGGTTTGTGGTATGAACATGATTACCTTATTCTTTATTCCAGTGGATTAG
ATAAAAAAAAAAAAAAAA
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