CF835232

Overview
NameCF835232
Unique NameCF835232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:411..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC7_ARATH (Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.581e-16
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = -3
Query:  188 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 523
            T   +   +L  NTTV+V+LQN   I    +E+HP HLHG +F VL +G G +    +              +  P G W  +RF A+NPGAW FHCHI+ H   G+G++  +
Sbjct:  438 TQKSTSAKILKFNTTVEVVLQNHALIA---AESHPMHLHGFNFHVLAQGFGNYDPSRDRSKLNLVDPQSRNTLAVPVGGWAVIRFTANNPGAWIFHCHIDVHLPFGLGMIFVV 547          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC8_ARATH (Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = -3
Query:  206 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTK-EDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGM 511
            + V  +  N+TV+++LQN   I P   E+HP HLHG +F+VLG G G +    D            NT  + P GW  LRF+A+NPG W FHCH++ H   G+
Sbjct:  441 TSVKKIRFNSTVEIVLQNTAIISP---ESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGVWLFHCHMDAHLPYGI 540          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC17_ARATH (Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = -3
Query:  206 PPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 541
            PP N   + G+ + +L  NT+V++++Q+ + +    +E+HP HLHG +F+V+G+G G F    +              V  P G W A+RF+ADNPG W  HCH+E H   G+
Sbjct:  442 PPNNTMVSNGTNLMVLPYNTSVELVMQDTSILG---AESHPLHLHGFNFFVVGQGFGNFDPNKDPRNFNLVDPIERNTVGVPSGGWAAIRFLADNPGVWFMHCHLEVHTSWGL 551          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC25_ORYSJ (Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC25 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.697e-16
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = -3
Query:  194 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVL 523
            TT  + V  L  N TV+++LQN   I     E+HP H+HG +F++L +G G + K                 +  P G W  +RFVADNPG W  HCH + H  +G+ +VL
Sbjct:  447 TTKSTKVKTLRYNETVEMVLQNTRLIA---KESHPMHIHGFNFFILAQGFGNYDKRRAERRFNLVDPQERNTIAVPTGGWAVIRFVADNPGMWYMHCHFDAHISLGLAMVL 554          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC24_ORYSJ (Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC24 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.523e-16
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = -3
Query:  197 NTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVV 526
            +T   + V  L  N+TV ++LQN   +     E+HP HLHG +F+VL +G G + +  +              V  P G W  +RFVADNPG W  HCH + H   G+G+V
Sbjct:  449 HTFKSTKVKTLKYNSTVQMVLQNTRLVS---KESHPMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAVIRFVADNPGVWFMHCHFDAHLEFGLGMV 556          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC14_ORYSJ (Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC14 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.601e-16
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = -3
Query:  200 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF---TKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 523
            T+ G+ V  L  N TV+V+LQN   +    +E HP HLHG +F+VL +G G +    ++ +           NT  + P GW  +RF ADNPG W  HCH+E H   G+ +
Sbjct:  452 TSKGTRVKALRYNETVEVVLQNTAVLG---TENHPLHLHGFNFYVLAQGTGNYYYLIRKKKIRKNLVNPQQRNTIAVPPGGWAVIRFTADNPGVWLMHCHLEAHLPFGLAM 559          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.009e-16
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = -3
Query:  179 GSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 514
            G+ +Y L   + V ++LQ+   + P   E HP HLHG+DF+++  G G F  K+D            NT  +   GW  +RF+ADNPG W  HCH++   HI  G+ +A  VE
Sbjct:  454 GTKLYKLKYGSRVQIVLQDTGIVTP---ENHPIHLHGYDFYIIAEGFGNFNPKKDTAKFNLEDPPLRNTVGVPVNGWAVIRFIADNPGVWIMHCHLDA--HISWGLAMAFLVE 561          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC3_ORYSJ (Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.009e-16
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  179 VYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 505
            +Y L   + V ++LQ+ + + P   E HP H+HG+DF++L  G G F  K+D            NT  +   GW  +RFVADNPG W  HCH++   HI  G+ +A  VE
Sbjct:  444 LYKLKFGSVVQIVLQDTSIVSP---ENHPIHIHGYDFYILAEGFGNFDPKKDAKKFNYVDPPQRNTVAVPTNGWAVIRFVADNPGVWLMHCHLD--VHITWGLAMAFLVE 548          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC12_ORYSJ (Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.748e-15
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = -3
Query:  206 PPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 541
            PP N N   G+ V +L     V++++Q+ + +    +E+HP HLHG +F+V+G+G G F   ++              V  P G W A+RF ADNPG W  HCH+E H   G+
Sbjct:  439 PPNNTNVMNGTKVLVLPYGANVELVMQDTSILG---AESHPLHLHGFNFFVVGQGFGNFDPINDPAKFNLYDPVERNTVGVPAGGWVAIRFHADNPGVWFMHCHLEVHMSWGL 548          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC1_ARATH (Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.283e-15
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = -3
Query:  149 NANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG-VETVGNIPNQAL 532
            N NT  G+ ++ +   + ++++ Q  + +     E HP H+HGH+F+V+GRG G F  E +                 P G W A+R  ADNPG W  HCH+E H   G    LA+G +   G +P+Q L
Sbjct:  449 NMNTEFGTKLFEVEFGSRLEIVFQGTSFLN---IENHPLHVHGHNFFVVGRGFGNFDPEKDPKRYNLVDPPERNTFAVPTGGWAAIRINADNPGVWFIHCHLEQHTSWG----LAMGFIVKDGPLPSQTL 571          
The following BLAST results are available for this feature:
BLAST of CF835232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LAC7_ARATH1.581e-1637.17Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=... [more]
LAC8_ARATH2.065e-1640.78Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=... [more]
LAC17_ARATH2.065e-1636.28Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 S... [more]
LAC25_ORYSJ2.697e-1636.94Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC24_ORYSJ3.523e-1636.94Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC14_ORYSJ4.601e-1637.84Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC5_ARATH6.009e-1637.17Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]
LAC3_ORYSJ6.009e-1638.18Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 ... [more]
LAC12_ORYSJ1.748e-1536.28Laccase-12/13 OS=Oryza sativa subsp. japonica GN=L... [more]
LAC1_ARATH2.283e-1533.85Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835232 ID=CF835232; Name=CF835232; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTATTCACTCCGAAATTTTATTAATATAAATCCCTTT
ACAACAATAGAAACTCCAGGAATAAAGTACATAAAACCATCTAGCTAGCC
TCAATTTTGTTTAGGGTTCATGAACCTTTTCCCAGTCAAACCACAAGCCA
ACGCCTGGTTTGGAATATTACCAACGGTTTCAACACCAAGAGCAAGAACC
ACACCCATTCCAATATGGAAATGGGGCTCAATATGGCAGTGAAATGCCCA
AGCACCTGGATTATCAGCAACAAATCTTAAAGCAGTCCAGCCATATGGGA
ATATCACCGCAGTATTTTTCAATGGTGGATTCTTCAAGTTAAATTTCTTC
TCATCTTCTTTCGTAAACTTCCCTTCTCCGCGCCCTAATACCCAAAAATC
ATGCCCATGCAAATGCCAAGGGTGGGTTTCACTCAAGTTTGGCCTTATCG
CGTTTGCATTTTGAAGTATAACATCAACTGTGGTGTTTAAACCAAGCATG
TAAACCCCACTTCCAAGAGTTGTATTAGCGTTTACAGGAGGTTTCATCAC
GTCATACTCATTCCAGAAGTTTTCGGGGGGAC
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