CF835232

Overview
NameCF835232
Unique NameCF835232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:411..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC21_ORYSJ (Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC21 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14
Identity = 42/110 (38.18%), Postives = 55/110 (50.00%), Query Frame = -3
Query:  197 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 523
            T  G+ V +L   T V+V+ Q+ +       E+HP HLHG  F+V+G G GKF    +            + V  P  GW A+RF ADNPG W  HCH + H   GM  V
Sbjct:  457 TKHGAKVKVLEYGTVVEVVFQDTSF------ESHPMHLHGFAFYVVGLGSGKFDDRRDPATYNLLDPPYQSTVSVPKAGWAAIRFRADNPGVWFMHCHFDRHMVWGMNTV 560          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC1_ORYSJ (Putative laccase-1 OS=Oryza sativa subsp. japonica GN=LAC1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 47/131 (35.88%), Postives = 62/131 (47.33%), Query Frame = -3
Query:  206 ENFWNEYDVMKPP---VNAN----TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 574
            ENF N+  V+  P   +N      T  G+ V +L   T V+V+ Q+ +       E HP HLHG  F+V+GRG G F +  +              V  P   W A+RF ADNPG W  HCH + H   GM
Sbjct:  427 ENFPNKLTVIVNPTGDINGGGPLLTKRGTKVKVLEYGTVVEVVFQDLSI------ENHPMHLHGFTFYVVGRGSGTFDERRDPATYNLIDPPFQNTVSVPKSSWAAIRFRADNPGVWFMHCHFDRHVVWGM 551          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = -3
Query:  149 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 487
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D            NT  +   GW A+RF+ADNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLADNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 577          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC16_ORYSJ (Putative laccase-16 OS=Oryza sativa subsp. japonica GN=LAC16 PE=5 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 41/110 (37.27%), Postives = 54/110 (49.09%), Query Frame = -3
Query:  197 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVV 523
            T  G+ V ++   T V+V+ Q+ +      SE HP HLHG  F+V+GRG G F +  +              V  P   W A+RF ADNPG W  HCH + H   GM  V
Sbjct:  341 TKRGTKVKVVEYGTVVEVVFQDLS------SENHPMHLHGFAFYVVGRGSGTFDERRDPATYNLVDPPFQNTVSVPKSSWAAIRFRADNPGVWFMHCHFDRHVVWGMDTV 444          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC5_ORYSJ (Putative laccase-5 OS=Oryza sativa subsp. japonica GN=LAC5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = -3
Query:  149 VYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 505
            V  L  NT+V+++LQ  +      +E+HP H+HG +F+V+G+G G +   ++              V  P G W A+RF+ADNPG W  HCH + H   G+ +   +     G +P+Q +
Sbjct:  424 VVPLAFNTSVELVLQGTSI---QGAESHPLHMHGFNFFVVGQGFGNYDPVNDPANYNLVDPVERNTVSVPTGGWVAVRFLADNPGVWLMHCHFDVHLSWGLSMAWLV---NDGPLPSQKM 537          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSI (Putative laccase-18 OS=Oryza sativa subsp. indica GN=LAC18 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = -3
Query:  149 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 487
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D            NT  +   GW A+RF+ DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLTDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 577          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC15_ARATH (Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 43/126 (34.13%), Postives = 63/126 (50.00%), Query Frame = -3
Query:  149 LGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF--TKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 517
            L + V ++     V++++Q  + +   L   HP HLHG  F+V+G G G +  ++ED               +  P  GW A+RFVADNPG W  HCH++ H   GM VV    +   G  PNQ +
Sbjct:  433 LATEVKVIEFGQVVELVIQGTSLVGGGLD--HPMHLHGFSFYVVGVGFGNYNISEEDPSSRYNLYDPPYKNTMTVPRNGWIAIRFVADNPGVWFMHCHLDRHQTWGMNVVF---IVKNGREPNQQI 553          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 44/120 (36.67%), Postives = 58/120 (48.33%), Query Frame = -3
Query:  158 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGK--FTKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPN 511
            +  Y+      VDVI+ N +  +      HP+HLHGH F VL RGE       + E           +T  I P  +  +RF+ADNPGAW  HCHIE H   G+   LA  +E    IP+
Sbjct:  394 TNAYIFEYGDVVDVIIDNHDTGK------HPFHLHGHTFQVLERGEENAGLYSDQESHTYYDNPMRRDTVEIEPGSFIVIRFIADNPGAWVIHCHIEWHMESGL---LATFIEAPEMIPS 504          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 35/106 (33.02%), Postives = 51/106 (48.11%), Query Frame = -3
Query:  197 GSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 514
            G+   +    + + +I QN   +    +E HP HLHGH F+V+G G G + ++                V    GW A+RFVA+NPG W  HCH + H   GM  +
Sbjct:  445 GTRAIVFEYGSRIQIIFQNTGTLT---TENHPIHLHGHSFYVIGYGTGNYDQQTAKFNLEDPPYLNTIGVPVG-GWAAIRFVANNPGLWLLHCHFDIHQTWGMSTM 546          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC3_BOTFU (Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=lcc3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 33/88 (37.50%), Postives = 41/88 (46.59%), Query Frame = -3
Query:  200 NANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGV 460
            N N    +++  HP HLHGHDF++LG G G +                    + P G W  L F  DNPGAW  HCHI  H   G+ V
Sbjct:  363 NVNGNPVSINVPHPMHLHGHDFFLLGTGVGTYNNTINGPSLDYDNPTRRDVAMLPAGGWMVLAFQTDNPGAWLMHCHIAWHVSEGLAV 450          
The following BLAST results are available for this feature:
BLAST of CF835232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LAC21_ORYSJ3.297e-1438.18Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC1_ORYSJ5.624e-1435.88Putative laccase-1 OS=Oryza sativa subsp. japonica... [more]
LAC18_ORYSJ5.624e-1439.47Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC16_ORYSJ9.593e-1437.27Putative laccase-16 OS=Oryza sativa subsp. japonic... [more]
LAC5_ORYSJ1.253e-1332.50Putative laccase-5 OS=Oryza sativa subsp. japonica... [more]
LAC18_ORYSI1.636e-1338.60Putative laccase-18 OS=Oryza sativa subsp. indica ... [more]
LAC15_ARATH2.137e-1334.13Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV... [more]
FIO1_SCHPO6.218e-1336.67Iron transport multicopper oxidase fio1 OS=Schizos... [more]
LAC6_ARATH3.086e-1233.02Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
LAC3_BOTFU2.000e-1137.50Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835232 ID=CF835232; Name=CF835232; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTATTCACTCCGAAATTTTATTAATATAAATCCCTTT
ACAACAATAGAAACTCCAGGAATAAAGTACATAAAACCATCTAGCTAGCC
TCAATTTTGTTTAGGGTTCATGAACCTTTTCCCAGTCAAACCACAAGCCA
ACGCCTGGTTTGGAATATTACCAACGGTTTCAACACCAAGAGCAAGAACC
ACACCCATTCCAATATGGAAATGGGGCTCAATATGGCAGTGAAATGCCCA
AGCACCTGGATTATCAGCAACAAATCTTAAAGCAGTCCAGCCATATGGGA
ATATCACCGCAGTATTTTTCAATGGTGGATTCTTCAAGTTAAATTTCTTC
TCATCTTCTTTCGTAAACTTCCCTTCTCCGCGCCCTAATACCCAAAAATC
ATGCCCATGCAAATGCCAAGGGTGGGTTTCACTCAAGTTTGGCCTTATCG
CGTTTGCATTTTGAAGTATAACATCAACTGTGGTGTTTAAACCAAGCATG
TAAACCCCACTTCCAAGAGTTGTATTAGCGTTTACAGGAGGTTTCATCAC
GTCATACTCATTCCAGAAGTTTTCGGGGGGAC
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