CF835233
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15 Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -3 Query: 289 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 534 ++ HF CG V+RVTIL DKF G PKG+AY+EF +VQ A++L++S GR +KVLPKRTN PG+ + G RG Sbjct: 163 LEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.256e-14 Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = -3 Query: 265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 534 ++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NE+ GRQ+KV+ KRTN PG+ +R R GYRGR Y PY Sbjct: 112 LEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.256e-14 Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = -3 Query: 337 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 534 ++ +F CG ++RVTIL DKF G PKG+AY+EF +VQ A++L+ES GR +KVLPKRTN PG+ Sbjct: 155 LEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13 Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = -3 Query: 286 HFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 525 +FQSCGTVNR+TIL+DK G PKG YVEF+ +++ A+ LN+S + RQLK+ PKRTN+P M+Q P + G RGR Sbjct: 120 YFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.388e-13 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -3 Query: 337 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 534 ++ +F CG ++RVTIL DKF G PKG+AY+EF +V+ A+ L+ES GR +KVLPKRTN PG+ Sbjct: 159 LEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.420e-12 Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = -3 Query: 238 VQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY--FYSP---YGYGK 534 ++ HF+ CG + R+T+L D+ G PKG+ Y+EF ++ALQLN EL G+++ V KRTN+PG + ++ ++N P M Y PY PPY SP +GY K Sbjct: 80 IEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPYPPNQSPNQNFGYNK 195 The following BLAST results are available for this feature:
BLAST of CF835233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835233 ID=CF835233; Name=CF835233; organism=Citrus sinensis; type=EST; length=536bpback to top |