CF835233

Overview
NameCF835233
Unique NameCF835233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:335..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  289 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 534
            ++ HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A++L++S   GR +KVLPKRTN PG+          + G RG
Sbjct:  163 LEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.256e-14
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = -3
Query:  265 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 534
            ++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+          +R R                     GYRGR  Y  PY
Sbjct:  112 LEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.256e-14
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  337 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 534
            ++ +F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A++L+ES   GR +KVLPKRTN PG+
Sbjct:  155 LEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = -3
Query:  286 HFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 525
            +FQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+ PKRTN+P  M+Q   P     + G RGR
Sbjct:  120 YFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.388e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -3
Query:  337 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 534
            ++ +F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+ES   GR +KVLPKRTN PG+
Sbjct:  159 LEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
BLAST of CF835233 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.420e-12
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = -3
Query:  238 VQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY--FYSP---YGYGK 534
            ++ HF+ CG + R+T+L D+  G PKG+ Y+EF      ++ALQLN  EL G+++ V  KRTN+PG  +        ++  ++N P M Y      PY PPY    SP   +GY K
Sbjct:   80 IEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPYPPNQSPNQNFGYNK 195          
The following BLAST results are available for this feature:
BLAST of CF835233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
EPAB2_HUMAN4.316e-1549.40Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
PABP2_DROPS1.256e-1441.23Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
EPAB2_RAT1.256e-1455.22Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
PABP2_DICDI1.063e-1351.81Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
EPAB2_MOUSE1.388e-1353.73Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
SGN1_YEAST3.420e-1237.93RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835233 ID=CF835233; Name=CF835233; organism=Citrus sinensis; type=EST; length=536bp
TTTTTTTTTTTTTTTTTCCATAAAGTTCATGCTAATAATGTTTGATCATC
TCTTTACATCAATAATAAACATGTAGCTAATAAATCCTTTGTTTCCTATC
TAAAGCAGGATACATAAGCACCATGATACATTGAATTTTTCAGTTTATGG
ATGATCCACAAATGTCACCATCTTCAACAGGAGCACAATCTGCTAGTAGT
AGGGCATGTACCTCATTGGCCTTCTGAACCTCGGAACCTTCCCATATCCA
TAAGGTGAATAGAAATAAGGAGGTACATAGGGCCTCCTGCCTCGGTACCC
CATGTAAGGATTGAAACGCCTTGGACGATACTGCTTCATACCAGGGACAT
TTGTCCTCTTAGGTAAAACCTTCAGTTGACGGCCATGTAATTCAGACTCA
TTCAACTGGAGAGCCTCTTGAACAGCATCTATTTCAAGGAATTCCACATA
AGCAAAACCCTTTGGCTGGCCAAACTTGTCTGTCAGAATAGTTACCCTGT
TTACAGTACCACAGGATTGGAAATGTTGCTGCACTT
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